View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4806-Insertion-11 (Length: 313)
Name: NF4806-Insertion-11
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806-Insertion-11 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 151 - 310
Target Start/End: Original strand, 8269043 - 8269202
Alignment:
| Q |
151 |
tgcaatacaattgtgactcgcaactgtggccgtgatatgaaagttttaggggtgatctttacaaagatattccatactataaagtataaactagacgacc |
250 |
Q |
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| T |
8269043 |
tgcaatacaactgtgactcgcaactgtggccgtgatatgaaagttttaggggtgatctttacaaagatattccatactataaagtataaactagacgacc |
8269142 |
T |
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| Q |
251 |
acaataaaaatcaaatcttgttttgttaagtgtgttggttatatgaattaaatttcatcg |
310 |
Q |
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| T |
8269143 |
acaataaaaatcaaatcttgttttgctaagtgtgttggttacataaattaaatttcatcg |
8269202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 8268927 - 8269052
Alignment:
| Q |
6 |
caaaatcaacttcacttaatagccactatatgtccctatccccatgtgaaataattaatgtcccttcacatgaatgccatgtaacttgtatatagttcta |
105 |
Q |
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| T |
8268927 |
caaaatcaacttcacttaatagccactatatgtccctatccccatgtgaaataattaatgtcccttcacatgaatgccatgtaacttgtatatagttcta |
8269026 |
T |
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| Q |
106 |
aattgtggtaaacaagtgcaatacaa |
131 |
Q |
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| T |
8269027 |
aattgtggtaaacaagtgcaatacaa |
8269052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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