View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4806-Insertion-13 (Length: 125)
Name: NF4806-Insertion-13
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806-Insertion-13 |
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| [»] chr3 (5 HSPs) |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 1e-60; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 19854488 - 19854605
Alignment:
| Q |
8 |
ttggctgcactgttgctattgaaaaatctagtgatgatggttcaaaaactaacaaggatgataataatactattggaaaatctagtgatgatggttttaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19854488 |
ttggctgcactgttgctattgaaaaatctagtgatgatggttcaaaaactaacaaggatgataataatactattggaaaatctagtgatgatggttttaa |
19854587 |
T |
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| Q |
108 |
aactaacaagggtgataa |
125 |
Q |
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|||||||||||||||||| |
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| T |
19854588 |
aactaacaagggtgataa |
19854605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 19948737 - 19948782
Alignment:
| Q |
8 |
ttggctgcactgttgctattgaaaaatctagtgatgatggttcaaa |
53 |
Q |
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| T |
19948737 |
ttggctgcactgttactattggaaaatctagtgatgatggttcaaa |
19948782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 19854557 - 19854607
Alignment:
| Q |
23 |
ctattgaaaaatctagtgatgatggttcaaaaactaacaaggatgataata |
73 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
19854557 |
ctattggaaaatctagtgatgatggttttaaaactaacaagggtgataata |
19854607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 19948750 - 19948778
Alignment:
| Q |
75 |
tactattggaaaatctagtgatgatggtt |
103 |
Q |
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| T |
19948750 |
tactattggaaaatctagtgatgatggtt |
19948778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 19854417 - 19854460
Alignment:
| Q |
30 |
aaaatctagtgatgatggttcaaaaactaacaaggatgataata |
73 |
Q |
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| T |
19854417 |
aaaatctagtgacgacggttcaaaaactagcaagggtgataata |
19854460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000004; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 22688761 - 22688719
Alignment:
| Q |
83 |
gaaaatctagtgatgatggttttaaaactaacaagggtgataa |
125 |
Q |
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| T |
22688761 |
gaaaatctagtgatgatggtttaagaactaacaagggtgataa |
22688719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 22688672 - 22688615
Alignment:
| Q |
16 |
actgttgctattgaaaaatctagtgatgatggttcaaaaactaacaaggatgataata |
73 |
Q |
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|||||| |||||| ||||||||||||||||||||||||| ||| ||||| || ||||| |
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| T |
22688672 |
actgttactattggaaaatctagtgatgatggttcaaaatctagcaagggtggtaata |
22688615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 22688760 - 22688717
Alignment:
| Q |
30 |
aaaatctagtgatgatggttcaaaaactaacaaggatgataata |
73 |
Q |
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|||||||||||||||||||| || ||||||||||| |||||||| |
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| T |
22688760 |
aaaatctagtgatgatggtttaagaactaacaagggtgataata |
22688717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 22688667 - 22688621
Alignment:
| Q |
75 |
tactattggaaaatctagtgatgatggttttaaaactaacaagggtg |
121 |
Q |
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||||||||||||||||||||||||||||| ||| ||| |||||||| |
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| T |
22688667 |
tactattggaaaatctagtgatgatggttcaaaatctagcaagggtg |
22688621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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