View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4806-Insertion-2 (Length: 810)
Name: NF4806-Insertion-2
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 543; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 7 - 791
Target Start/End: Original strand, 21011065 - 21011850
Alignment:
| Q |
7 |
accgtactcatttgcagatatgtattgttgt---ctcgttgtcatgtaacctgcagtttaaa-------tcactagagacattcactttaggtcatagga |
96 |
Q |
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||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
21011065 |
accgtactcttttgcaggtatgtattgttgttgtctcgttgtcatgtaacctgcagtttaaactttaaatcactagagacattcattttaggtcatagga |
21011164 |
T |
|
| Q |
97 |
caactgttatataacattg-caccaaaagttaaaaacttgacagataaatttcaagctcgaaaatacataaaaggataactgttaattactctagtgatt |
195 |
Q |
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||||||||| ||| ||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21011165 |
caactgttaaatagcattgtccccaaaagttaaaaacttgacagataaatttcaagcttgaaaatacataaaaggataactgttaattactctagtgatt |
21011264 |
T |
|
| Q |
196 |
aacgattattccctacgaaattatcaacacaaggataactgttaaaacatagnnnnnnnnnnnnnnnnnnnnngatgagatccatataccctccctaccc |
295 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21011265 |
aacgattattccctaccaaattatcaacacaaggataactgttaaaacatagaaaattaaaattaaaataaaagatgagatccatataccctccctaccc |
21011364 |
T |
|
| Q |
296 |
ttacatttaactaaatataaagtctaaactagtgagtgatatattagaaatgtctgttaaactaaacagaaccctttcccttatgctgaacaagaagatc |
395 |
Q |
| |
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||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21011365 |
ttacattcaactaaatctaaagtctaaactagtgagtgatatattagaaatgtctgctaaactaaacagaaccctttcccttatgctgaacaagaagatc |
21011464 |
T |
|
| Q |
396 |
tcaaacgatctaaatggttagtgaaagctgctagctctgttaaattacaagtctaatagctctgcttgaaatccaaatggttggtcctagtgaagtacag |
495 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21011465 |
tcaaatgatctaaatggttagtgaaagctgctagctctgttaaattacaagtctaatagctctgcttgaaatccaaatggctggtcctagtgaagtacag |
21011564 |
T |
|
| Q |
496 |
ggacccattcgtaccgtcctgggagtggtacatcattcactacatcaaaattgtacctgcaaaatataaacaacataacacattggcatattgcatatta |
595 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21011565 |
ggacccattcgtaccgtcctgggagaggtacatcattcactacatcaaaattgtacctgcaaaatataaacaacataacacattggcatattgcatatta |
21011664 |
T |
|
| Q |
596 |
ctattaaataaatcaggaaacagatccaaaagattaagattgggtcaaaagatttaagatgaatacatacttttccataaataatgcttgttgctgcttc |
695 |
Q |
| |
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||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21011665 |
ctattaa--taatcaggaaacagatcc-aaagattaagattgggtcaaaaga-ttaagatgaatacatacttttccataaataatgcttgttgctgcttc |
21011760 |
T |
|
| Q |
696 |
tctgccaaaagcaaaagaaactcatccatttcataagatgttggaaatatttcttttgcatgtgttcttgaattatgcgggttcctcctttgtctt |
791 |
Q |
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| T |
21011761 |
tctgcc-aaagcaaa--gaactcatccatttcataagatgttgg-aatatttc-tttgcatgtgttcttgaattatg-tggttcgtcctttgtctt |
21011850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 269 - 791
Target Start/End: Original strand, 20959942 - 20960463
Alignment:
| Q |
269 |
gatgagatccatataccctccctacccttacatttaactaaatataaagtctaaactagtgagtgatatattagaaatgtctgttaaactaaacagaacc |
368 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20959942 |
gatgagatccatataccctccctacccttacatttaactaaatcttaagtctaaactagtgagtgatatattagaaatgtctgctaaactaaacagaacc |
20960041 |
T |
|
| Q |
369 |
ctttcccttatgctgaacaagaagatctcaaacgatctaaatggttagtgaaagctgctagctctgttaaattacaagtctaatagctctgcttgaaatc |
468 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20960042 |
ctttcccttatgctgaacaagaagatctcaaatgatctaaatggttagtgaaagctgctagctctgttaaattacaagtctaatagctctgcttgaaatc |
20960141 |
T |
|
| Q |
469 |
caaatggttggtcctagtgaagtacagggacccattcgtaccgtcctgggagtggtacatcattcactacatcaaaattgtacctgcaaaatataaacaa |
568 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20960142 |
caaatggctggtcctagtgaagtacagggacccattcgtaccgtcctgggagtggtacatcattcactacatcaaaattgtacctgcaaaatataaacaa |
20960241 |
T |
|
| Q |
569 |
cataacacattggcatattgcatattactatta----aataaatcaggaaacag--atccaaaagattaagattgggtcaaaagatttaagatgaataca |
662 |
Q |
| |
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|||||||||||||||||||||||||| ||||| || | | || ||| || | || | || ||||||||||||||| |||||||||||||| |
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| T |
20960242 |
tataacacattggcatattgcatattaatattaatccaaaacaaaagaaaaaagtaaatcactaatttgcgattgggtcaaaaga-ttaagatgaataca |
20960340 |
T |
|
| Q |
663 |
tacttttccataaataatgcttgttgctgcttctctgccaaaagcaaaagaaactcatccatttcataagatgttggaaatatttcttttgcatgtgttc |
762 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||| ||||| || |||||| | |||||| ||||||||||||| |
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|
| T |
20960341 |
tacttttccataaataatgcttgttgctgcttctctgcc-aaggcaaa--gaattcatccacttcattagttgttgg-agtatttc-tttgcatgtgttc |
20960435 |
T |
|
| Q |
763 |
ttgaattatgcgggttcctcctttgtctt |
791 |
Q |
| |
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|||||| ||| ||||| ||||||||||| |
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| T |
20960436 |
ttgaataatg-tggttcgtcctttgtctt |
20960463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 20959759 - 20959863
Alignment:
| Q |
25 |
tatgtattgttgtctcgttgtcatgtaacctgcagtttaaatcactagagacattcactttaggtcataggacaactgttatataacattg-caccaaaa |
123 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20959759 |
tatgtattgttgtctcgttgtcatgtaacctgcagtttaaatcactagagacattcattttaggtcataggacaactgttatataacattgtcaccaaaa |
20959858 |
T |
|
| Q |
124 |
gttaa |
128 |
Q |
| |
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||||| |
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|
| T |
20959859 |
gttaa |
20959863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 20959859 - 20959926
Alignment:
| Q |
177 |
gttaattactctagtgattaacgattattccctacgaaattatcaacacaaggataactgttaaaaca |
244 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
20959859 |
gttaattactctggtgattaacgattattccctacgaaactatcaacacaaggataactgttaaaaca |
20959926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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