View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4806-Insertion-4 (Length: 687)

Name: NF4806-Insertion-4
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4806-Insertion-4
NF4806-Insertion-4
[»] chr1 (1 HSPs)
chr1 (10-687)||(45869386-45870046)


Alignment Details
Target: chr1 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 10 - 687
Target Start/End: Complemental strand, 45870046 - 45869386
Alignment:
Q  10 tatcacctaaaagttaaaatctgtggcaatgaatgatgaaatgaaaatgacctaatccctccatatatacacatagatccaaaatcagcagcaagatcaa 109  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45870046 tatcacctaaaaattaaaatatgtggcaatgaatgatgaaatgaaaatgacctaatccctccatatatacacatagatccaaaatcagcagcaagatcaa 45869947  T
Q  110 aaccagctactgcaaattatcatcaaagcaacacaatcaatcatagtccgtacgtacgtacctagctagctagctagnnnnnnngagggtgaatcaagat 209  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||        ||||||||  |        ||||||||||||||||    
T  45869946 aaccagctactgcaaattaacatcaaagcaacacaatcaatcatagtccgtacgtac--------ctagctagaaa-----aaagagggtgaatcaagat 45869860  T
Q  210 ctaccgtacaaacacttgaaatatccaaaatcaaacaaattcaaagagagaaaatgaatgattctgtcttcaaaaattgtaactccaaagattatctcgt 309  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45869859 ctaccgtacaaacacttgaaataaccaaaatcaaacaaattcaaagagagaaaatgaatgattctgtcttcaaaaattgtaactccaaagattatctcgt 45869760  T
Q  310 ccatcagaattgcgaggtgaatcatctgaagaacaattagagaatgaactcatccttggtggactaacctgcattcctctagccatatcatctaacaaac 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45869759 ccatcagaattgcgaggtgaatcatctgaagaacaattagagaatgaactcatccttggtggactaacctgcattcctctagccatatcatctaacaaac 45869660  T
Q  410 ttggcatattcaacaactcatcttcatcaatatattcatgatgatgaccttgttgttgttgcaatattccactacttgaagaagacccctcaaaactaaa 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45869659 ttggcatattcaacaactcatcttcatcaatatattcatgatgatgaccttgttgttgttgcaatattccactacttgaagaagacccctcaaaactaaa 45869560  T
Q  510 agctgaagggttttgttgttgttgatcttgttgtgctggtctcatgattctggtttgtgcagcagcttcagcagcagcacgaatatcagttgaagacaat 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45869559 agctgaagggttttgttgttgttgatcttgttgtgctggtctcatgattctggtttgtgcagcagcttcagcagcagcacgaatatcagttgaagacaat 45869460  T
Q  610 gaagcaggaatagggtaagatagtattgaaattggggaaagtttaagagtagtatcaggtcctttttaaagcaagagc 687  Q
    ||||||||||||||||||||||||||||||  | ||||||| |||||||||||||||||||| |||||||||||||||    
T  45869459 gaagcaggaatagggtaagatagtattgaa--ttgggaaag-ttaagagtagtatcaggtcc-ttttaaagcaagagc 45869386  T

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