View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4806-Insertion-6 (Length: 670)

Name: NF4806-Insertion-6
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4806-Insertion-6
NF4806-Insertion-6
[»] chr5 (1 HSPs)
chr5 (8-670)||(13251462-13252119)


Alignment Details
Target: chr5 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 8 - 670
Target Start/End: Complemental strand, 13252119 - 13251462
Alignment:
Q  8 gttatttcagaggctacaacaaagagtaaattagcttcattgaatgagaagcttgatgtattggagcgtcgtttggaattacttgaagttcaagttggca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13252119 gttatttcagaggctacaacaaagagtaaattagcttcattgaatgagaagcttgatgtattggagcgtcgtttggaattacttgaagttcaagttggca 13252020  T
Q  108 atgcttcagctaatccttctctttttgcaacttgatttgtataatgtatcatgtaatacaactttctagtaagatttctccaccacacctatataatgta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13252019 atgcttcagctaatccttctctttttgcaacttgatttgtataatgtatcatgtaatacaactttctagtaagatttctccaccacacctatataatgta 13251920  T
Q  208 taatctagatggaattcttgatctataagtcatttctaaatcgaaagtttgtgcgtttgattagtgtaatcatgcnnnnnnnnnnnnnnnnnnnnnnnaa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                       ||    
T  13251919 taatctagatggaattcttgatctataagtcatttctaaatcgaaagtttgtgcgtttgattagtgtaatcatgctttgtttgtttgtttgtttgtttaa 13251820  T
Q  308 ttctagttcttgattgccaatttattgggactagtaaattcttgtgtcttataaatgcagttgttgcaattctcatatattttatcatgtaatagtgctt 407  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13251819 ttctagttcttgattgccaatttattgggtctagtaaattcttgtgtcttataaatgcagttgttgcaattctcatatgttttatcatgtaatagtgctt 13251720  T
Q  408 ttcaacttagagccaattttagtataaaacaaaacttagagccaatttgagtaaaaatctctaaaagcacttgtgcggaagaatcttgaaatagttgagt 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13251719 ttcaacttagagccaattttagtataaaacaaaacttagagccaatttgagtaaaaatctctaaaagcacttgtgc-gaagaatcttgaaatagttgagt 13251621  T
Q  508 tttttaaataacat-cttgtagtagtcaaagttaccttctagatctatacagaggttctcttgtttaacttgcctataaaatatctataagcttgtaagt 606  Q
    |||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  13251620 tttttaaataacatccttgtagtggtcaaatttaccttctagatctatacagaggttctctcgtttaacttgcctat-aaatatctataagtttgtaagt 13251522  T
Q  607 tcttttctatttgtaaaagaactaaaaagttttattttaattgagaaagttctttctaagatag 670  Q
    ||||||||||| |||||||||||||||   ||||||||||||||| |||||| |||||||||||    
T  13251521 tcttttctattagtaaaagaactaaaa--gtttattttaattgag-aagttc-ttctaagatag 13251462  T

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