View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4806-Insertion-7 (Length: 464)
Name: NF4806-Insertion-7
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806-Insertion-7 |
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| [»] scaffold0320 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: scaffold0320 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: scaffold0320
Description:
Target: scaffold0320; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 8 - 464
Target Start/End: Original strand, 17304 - 17760
Alignment:
| Q |
8 |
ctaattgacaaggaagtgatagtttaaggactaaattgactgtttattatggtgtgtttggatacaattttattaactgatgtaaatggaataggttgat |
107 |
Q |
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| T |
17304 |
ctaattgacaaggaagtgatagtttaaggactaaattgactgtttattacggtgtgtttggatacaattttattaactgatgtaaatggaataggttgat |
17403 |
T |
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| Q |
108 |
ttcccgtgcattttttgtgctattagatagtgtatataggaagtttattcctccttttactcaactgttattggaattgtacagcatcaaatgcaaacaa |
207 |
Q |
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| T |
17404 |
ttcccgtgcattttttgtgctattagatagtgtatataggaagtttattcctccttttactcaactgttattggaattgtacagcatcaaatgcaaacaa |
17503 |
T |
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| Q |
208 |
gcccttagttttatgctctgtagcatgggacccttagtctttcgatgggagatgaatttttatttgttatatgttcaacatgtgtttttaaagcatgtaa |
307 |
Q |
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| T |
17504 |
gcccttagttttatgctctgtagcatgggacccttagtctttcgatgggagatgaatttttatttgttatatgttcaacatgtgtttttaaagcatgtaa |
17603 |
T |
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| Q |
308 |
caagttcaagcggtagccaagcgataggggagtcaaaaacttgatcaatggttcacttaggatattgacagaagaactaattttagtgacaagactgtaa |
407 |
Q |
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| T |
17604 |
caagttcaagctgtagccaagcgataggggagtcaaaaacttgatcaatggttcacttaggatattgacagaagaactaattttagtgacaagactgtaa |
17703 |
T |
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| Q |
408 |
tagcagtgacaaattgtccttgtgatatttgttctctggtttaacctctgatatgca |
464 |
Q |
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| T |
17704 |
tagcagtgacaaattgtccttgtgatatttgttctctggtttaacctctgatatgca |
17760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 10 - 464
Target Start/End: Original strand, 28122135 - 28122599
Alignment:
| Q |
10 |
aattgacaaggaagtgatagtttaaggactaaattgactgtttattatggtgtgtttggatacaattttattaactgatgtaaatggaataggttgattt |
109 |
Q |
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| T |
28122135 |
aattgacaaggaagtgatagtctaaggactaaattgactgtttattacggtgtgtttggttacgattttattaactgatgtaaatggaataggttgattt |
28122234 |
T |
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| Q |
110 |
cccgtgcattttttgtgctattagatagtgtatataggaagtttattcctccttttactcaactgttattggaattgtacagcatcaaatgcaaacaagc |
209 |
Q |
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| T |
28122235 |
ccggtgcactttttgtgctgatagata--gtatataggaagtttattcctccttttgcttaactatcgttggaattgtacaacatctaatgcaaacaatc |
28122332 |
T |
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| Q |
210 |
ccttagttttatgctctgtagc-atgggacccttagtctttcgatgggagatgaatttttatttgttatatgttcaacatgtgtttttaaagcatgtaac |
308 |
Q |
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| T |
28122333 |
ccttagttttatgctctgtagcgatgcaacccttagactttcgatgggggatgagtttttatttgttatgtgttcaacatatgtttttatagcatgtaac |
28122432 |
T |
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| Q |
309 |
aagttcaagcggtagcc-----------aagcgataggggagtcaaaaacttgatcaatggttcacttaggatattgacagaagaactaattttagtgac |
397 |
Q |
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| T |
28122433 |
aagttcaagttgtagccattagaccaagaagctataggggagtcaaaaacttgatcaatggttcacttaggatattgacagaagaactaattttagtgac |
28122532 |
T |
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| Q |
398 |
aagactgtaatagcagtgacaaattgtccttgtgatatttgttctctggtttaacctctgatatgca |
464 |
Q |
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| T |
28122533 |
aagactgtaatagcagtgacaaattgtccttgtgatatttgttctctggtttaacctctgatatgca |
28122599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 18048264 - 18048297
Alignment:
| Q |
22 |
agtgatagtttaaggactaaattgactgtttatt |
55 |
Q |
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| T |
18048264 |
agtgatagtttaaggactaaattgactgtttatt |
18048297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 18048082 - 18048049
Alignment:
| Q |
22 |
agtgatagtttaaggactaaattgactgtttatt |
55 |
Q |
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| T |
18048082 |
agtgatagtttagggactaaattgactgtttatt |
18048049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 372
Target Start/End: Original strand, 34816346 - 34816385
Alignment:
| Q |
333 |
aggggagtcaaaaacttgatcaatggttcacttaggatat |
372 |
Q |
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| T |
34816346 |
aggggagtcaaaaacttgatcaatagttcaattaggatat |
34816385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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