View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4806-Insertion-9 (Length: 417)

Name: NF4806-Insertion-9
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4806-Insertion-9
NF4806-Insertion-9
[»] chr2 (3 HSPs)
chr2 (307-414)||(21484875-21484982)
chr2 (254-414)||(37127536-37127696)
chr2 (97-209)||(21485081-21485193)
[»] chr3 (9 HSPs)
chr3 (305-407)||(10494329-10494431)
chr3 (254-414)||(12717962-12718121)
chr3 (254-414)||(27035921-27036081)
chr3 (254-405)||(33843875-33844026)
chr3 (305-416)||(27024715-27024826)
chr3 (307-414)||(51328566-51328673)
chr3 (97-166)||(33843718-33843787)
chr3 (97-167)||(10494582-10494652)
chr3 (97-167)||(51328801-51328871)
[»] chr1 (6 HSPs)
chr1 (254-400)||(21535438-21535584)
chr1 (264-408)||(41367157-41367301)
chr1 (97-149)||(21535688-21535740)
chr1 (280-414)||(28639557-28639691)
chr1 (334-414)||(41933080-41933160)
chr1 (97-134)||(29914030-29914067)
[»] chr5 (19 HSPs)
chr5 (8-92)||(9349599-9349683)
chr5 (8-79)||(9356991-9357062)
chr5 (8-74)||(9374118-9374184)
chr5 (8-92)||(9301195-9301279)
chr5 (16-79)||(9287858-9287921)
chr5 (8-79)||(9296980-9297051)
chr5 (8-75)||(9329372-9329439)
chr5 (9-79)||(9331612-9331682)
chr5 (9-79)||(9351340-9351410)
chr5 (8-74)||(9292373-9292439)
chr5 (8-74)||(9304813-9304879)
chr5 (16-80)||(9361406-9361470)
chr5 (97-167)||(27495363-27495431)
chr5 (312-389)||(23247908-23247985)
chr5 (97-165)||(9129325-9129393)
chr5 (16-56)||(9368242-9368282)
chr5 (259-383)||(17978779-17978903)
chr5 (104-164)||(17979015-17979075)
chr5 (254-310)||(27495515-27495571)
[»] chr7 (6 HSPs)
chr7 (280-405)||(1377744-1377869)
chr7 (254-397)||(1852518-1852661)
chr7 (107-165)||(1852362-1852420)
chr7 (281-414)||(18500731-18500862)
chr7 (115-168)||(26188081-26188134)
chr7 (107-167)||(1377561-1377621)
[»] scaffold0054 (2 HSPs)
scaffold0054 (254-414)||(18643-18803)
scaffold0054 (97-209)||(18846-18957)
[»] chr6 (6 HSPs)
chr6 (304-414)||(28547247-28547357)
chr6 (333-417)||(25138249-25138331)
chr6 (254-396)||(20818893-20819035)
chr6 (97-167)||(25138508-25138578)
chr6 (112-167)||(20818731-20818786)
chr6 (303-380)||(17520257-17520334)
[»] chr8 (7 HSPs)
chr8 (305-417)||(11457445-11457557)
chr8 (254-380)||(28284808-28284934)
chr8 (12-56)||(31467352-31467396)
chr8 (12-54)||(31477200-31477242)
chr8 (97-166)||(11457224-11457293)
chr8 (12-56)||(31502562-31502606)
chr8 (264-380)||(38621202-38621318)
[»] scaffold0160 (1 HSPs)
scaffold0160 (303-414)||(16908-17019)
[»] scaffold0001 (1 HSPs)
scaffold0001 (332-414)||(426865-426947)
[»] scaffold0210 (1 HSPs)
scaffold0210 (342-414)||(7777-7849)
[»] scaffold0048 (1 HSPs)
scaffold0048 (306-414)||(52237-52345)
[»] chr4 (1 HSPs)
chr4 (97-166)||(39807154-39807223)


Alignment Details
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 307 - 414
Target Start/End: Complemental strand, 21484982 - 21484875
Alignment:
Q  307 ccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtttca 406  Q
    |||| |||||||||||||| || || |||||||||||||| |||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||    
T  21484982 ccaactgacatatttctatcggaaggccaactggatcgagctcataaaaaccttttcggattcagatatgcaacataacgatgaaagacaaggtgtttca 21484883  T
Q  407 agcggatt 414  Q
    || |||||    
T  21484882 agaggatt 21484875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 254 - 414
Target Start/End: Complemental strand, 37127696 - 37127536
Alignment:
Q  254 tattatagggtggtgtttgaagaagagcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataa 353  Q
    |||| |||| ||||||||||||| | | ||||||||||| ||  || | |||||||| ||||||||||| || || || |||||| |||| || ||||||    
T  37127696 tattctaggatggtgtttgaagaggtgtttttgaacttgatcttgcaggcctgccaactgacatatttcgatcggcaggccaacttgatcaagttcataa 37127597  T
Q  354 aaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtttcaagcggatt 414  Q
    |||||| |||| | ||||||  | ||||||||||||||||||||||||||||||| |||||    
T  37127596 aaacctcttcaaaattagatccgtaacataacgatgaaagacaaggtgtttcaagaggatt 37127536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 209
Target Start/End: Complemental strand, 21485193 - 21485081
Alignment:
Q  97 tataattcggaaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggaggggnnnnnnnnagagagatttcatggaaaat 196  Q
    |||||| ||||||||| |||||||||  ||||| ||||||||| ||||||||| ||||||||||| || ||         ||||||||||| ||||||||    
T  21485193 tataatccggaaatgagaaaaacattatggattgtataatccggacagcaccagaatgcctatttagatggtttttttttagagagatttcgtggaaaat 21485094  T
Q  197 aagtaatcaatgc 209  Q
    ||||||| |||||    
T  21485093 aagtaataaatgc 21485081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 305 - 407
Target Start/End: Complemental strand, 10494431 - 10494329
Alignment:
Q  305 tgccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgttt 404  Q
    |||||| |||||||||||||| || || |||||||||||||| |||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||    
T  10494431 tgccaactgacatatttctatcggaaggccaactggatcgagctcataaaaaccttttcggattcagatctgcaacataacgatgaaagacaaggtgttt 10494332  T
Q  405 caa 407  Q
    |||    
T  10494331 caa 10494329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 254 - 414
Target Start/End: Original strand, 12717962 - 12718121
Alignment:
Q  254 tattatagggtggtgtttgaagaagagcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataa 353  Q
    |||| |||| ||||||| ||||| | ||||||||||| | |||| | |||||||||| ||||||||||||||  | || ||||||||||| || ||||||    
T  12717962 tattctaggatggtgttggaagaggtgcttttgaactcgatccaactgacctgccaactgacatatttctatcagcaggccaactggatcaagttcataa 12718061  T
Q  354 aaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtttcaagcggatt 414  Q
    |||||||||  |||| |||| |||||||||||||||||||||| ||||||||||| |||||    
T  12718062 aaacctttt-tgattcagatatgcaacataacgatgaaagacatggtgtttcaagaggatt 12718121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 254 - 414
Target Start/End: Original strand, 27035921 - 27036081
Alignment:
Q  254 tattatagggtggtgtttgaagaagagcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataa 353  Q
    |||| |||| ||||||| ||||| | | ||||||||||| ||||   |  ||||||| ||||||||||  || || ||||||| ||||||||| ||||||    
T  27035921 tattctaggatggtgttcgaagaggtgtttttgaacttgatccaaaaggtctgccaactgacatattttgatcggcagaccaattggatcgagttcataa 27036020  T
Q  354 aaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtttcaagcggatt 414  Q
     ||||| ||| || |||||| |||||||||||||||||||||||||||||||||| |||||    
T  27036021 gaacctcttcggaattagatctgcaacataacgatgaaagacaaggtgtttcaagaggatt 27036081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 254 - 405
Target Start/End: Original strand, 33843875 - 33844026
Alignment:
Q  254 tattatagggtggtgtttgaagaagagcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataa 353  Q
    |||| |||| || |||| ||||| | ||||||||||| | |||||| | ||| |||| ||| |||||| ||| || || ||| |||||||||| ||||||    
T  33843875 tattttaggatgatgttcgaagaggtgcttttgaactcgatccagctggcctaccaactgatatatttttatcggcaggccatctggatcgagttcataa 33843974  T
Q  354 aaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtttc 405  Q
    ||||||||||||||| |||| ||||||| |||||||||| ||||||||||||    
T  33843975 aaaccttttcagattcagatctgcaacacaacgatgaaatacaaggtgtttc 33844026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 305 - 416
Target Start/End: Original strand, 27024715 - 27024826
Alignment:
Q  305 tgccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgttt 404  Q
    |||||| ||||||||||  || || ||||||||||||||||  | |||| ||||| ||| || |||||| ||||||| ||||||||||||||||||||||    
T  27024715 tgccaactgacatattttgatcgggagaccaactggatcgattttataagaacctcttcggaattagatctgcaacacaacgatgaaagacaaggtgttt 27024814  T
Q  405 caagcggattat 416  Q
    |||| |||||||    
T  27024815 caagaggattat 27024826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 307 - 414
Target Start/End: Complemental strand, 51328673 - 51328566
Alignment:
Q  307 ccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtttca 406  Q
    |||| |||||||||| ||| || |  |||| | |||||||||||||||||||||||| |||| |||| |||||||| |||| ||||||||| ||||||||    
T  51328673 ccaactgacatatttatatcggaatgccaagtagatcgaggtcataaaaaccttttcggattcagatctgcaacattacgacgaaagacaaagtgtttca 51328574  T
Q  407 agcggatt 414  Q
    || |||||    
T  51328573 agaggatt 51328566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 33843718 - 33843787
Alignment:
Q  97 tataattcggaaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggagg 166  Q
    |||||| |||||||||||||||| |||||||||||||||| |||||| ||||| |||| |||||||||||    
T  33843718 tataatccggaaatgacaaaaacgtttcggattatataatgcgaacaacaccagaatgtctatttggagg 33843787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 10494652 - 10494582
Alignment:
Q  97 tataattcggaaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggaggg 167  Q
    |||||| |||||||||||||||||||  ||||||||||||| |||| |||| | |||||||||||||||||    
T  10494652 tataatccggaaatgacaaaaacattctggattatataatctgaaccgcacgagaatgcctatttggaggg 10494582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 51328871 - 51328801
Alignment:
Q  97 tataattcggaaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggaggg 167  Q
    |||||| || ||||||||||||||| | |||||||||||||||||||  |||| |||||||| ||||||||    
T  51328871 tataatccgaaaatgacaaaaacatattggattatataatccgaacaaaaccataatgcctacttggaggg 51328801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 254 - 400
Target Start/End: Complemental strand, 21535584 - 21535438
Alignment:
Q  254 tattatagggtggtgtttgaagaagagcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataa 353  Q
    |||| |||| ||||||| ||||| |  |||||||||| | |||||| | | ||||||   ||||||||||||||| ||||||||||||||||| ||||||    
T  21535584 tattctaggatggtgttcgaagaggtacttttgaactcgatccagctggcttgccaacatacatatttctattggcagaccaactggatcgagttcataa 21535485  T
Q  354 aaaccttttcagatttagatttgcaacataacgatgaaagacaaggt 400  Q
    |||||||||| |||| |||| ||||||||||||||||||||||||||    
T  21535484 aaaccttttcggattcagatctgcaacataacgatgaaagacaaggt 21535438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 264 - 408
Target Start/End: Original strand, 41367157 - 41367301
Alignment:
Q  264 tggtgtttgaagaagagcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttc 363  Q
    ||||||| ||||| | ||||||||||||| | |||  | |||  ||| |||||||||  | | || || |||||||||||||| ||||||||||||||||    
T  41367157 tggtgttcgaagaggtgcttttgaacttgattcagatggcctatcaactgacatattaatgtcggaaggccaactggatcgagctcataaaaaccttttc 41367256  T
Q  364 agatttagatttgcaacataacgatgaaagacaaggtgtttcaag 408  Q
     ||||||||| || |||||||||||||||||||||||||||||||    
T  41367257 ggatttagatctgaaacataacgatgaaagacaaggtgtttcaag 41367301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 21535740 - 21535688
Alignment:
Q  97 tataattcggaaatgacaaaaacatttcggattatataatccgaacagcacca 149  Q
    |||||| || |||||||||||||||| |||||||||||||||||||| |||||    
T  21535740 tataatccgaaaatgacaaaaacattccggattatataatccgaacaacacca 21535688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 414
Target Start/End: Complemental strand, 28639691 - 28639557
Alignment:
Q  280 gcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaa 379  Q
    ||||||| ||||| |||||| | | |||||  ||||||||||||||| | ||  |||||||||| || ||||   ||||| ||| || | | || |||||    
T  28639691 gcttttgtacttgatccagctggcttgccagctgacatatttctatttgcaggtcaactggatcaagttcatgcgaacctcttcggaatcaaatctgcaa 28639592  T
Q  380 cataacgatgaaagacaaggtgtttcaagcggatt 414  Q
    ||||| | ||||||||||||||||||||| |||||    
T  28639591 cataatggtgaaagacaaggtgtttcaagaggatt 28639557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 414
Target Start/End: Complemental strand, 41933160 - 41933080
Alignment:
Q  334 caactggatcgaggtcataaaaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtttcaagcggatt 414  Q
    |||||||||| || |||||| ||||| ||| |  | | || |||||||||| ||||||||||||||||||||||| |||||    
T  41933160 caactggatcaagttcataagaacctcttcggtatcatatatgcaacataatgatgaaagacaaggtgtttcaagaggatt 41933080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 29914030 - 29914067
Alignment:
Q  97 tataattcggaaatgacaaaaacatttcggattatata 134  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  29914030 tataatccggaaatgacaaaaacattccggattatata 29914067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 9349683 - 9349599
Alignment:
Q  8 ttctatactttcaattgcattcttcaaagcctcaaatctttcatgtgcaacattagaaccttcacttataagaattcgcaaagat 92  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||  ||| |||||||    
T  9349683 ttctatactttcaattgcattctccaaagcttcaaatctttcatgtgcaacattagaaccttcacttataagggttctcaaagat 9349599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 9357062 - 9356991
Alignment:
Q  8 ttctatactttcaattgcattcttcaaagcctcaaatctttcatgtgcaacattagaaccttcacttataag 79  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9357062 ttctatactttcaattgcattctccaaagcctcaaatctttcatgtgcaacgttagaaccttcacttataag 9356991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 9374184 - 9374118
Alignment:
Q  8 ttctatactttcaattgcattcttcaaagcctcaaatctttcatgtgcaacattagaaccttcactt 74  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9374184 ttctatactttcaattgcattctccaaagcctcaaatctttcatgtgcaacattagaaccttcactt 9374118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 9301195 - 9301279
Alignment:
Q  8 ttctatactttcaattgcattcttcaaagcctcaaatctttcatgtgcaacattagaaccttcacttataagaattcgcaaagat 92  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||  ||| |||||||    
T  9301195 ttctatactttcaattgcattctccaaagcctcaaatctttcatgtgcaacgttagaaccttcacttgtaagggttctcaaagat 9301279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 9287858 - 9287921
Alignment:
Q  16 tttcaattgcattcttcaaagcctcaaatctttcatgtgcaacattagaaccttcacttataag 79  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9287858 tttcaattgcattctccaaagcctcaaatctttcatgtgcaacattagaaccttcacttataag 9287921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 9296980 - 9297051
Alignment:
Q  8 ttctatactttcaattgcattcttcaaagcctcaaatctttcatgtgcaacattagaaccttcacttataag 79  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||    
T  9296980 ttctatactttcaattgcattctccaaagcctcaaatctatcatgtgcaacaatagaaccttcacttataag 9297051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 9329439 - 9329372
Alignment:
Q  8 ttctatactttcaattgcattcttcaaagcctcaaatctttcatgtgcaacattagaaccttcactta 75  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9329439 ttctatactttcaactgcattctccaaagcctcaaatctttcatgtgcaacattagaaccttcactta 9329372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 9331612 - 9331682
Alignment:
Q  9 tctatactttcaattgcattcttcaaagcctcaaatctttcatgtgcaacattagaaccttcacttataag 79  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||    
T  9331612 tctatactttcaattgcattctccaaagcctcaaatccttcatgtgcaacatttgaaccttcacttataag 9331682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 9351340 - 9351410
Alignment:
Q  9 tctatactttcaattgcattcttcaaagcctcaaatctttcatgtgcaacattagaaccttcacttataag 79  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||    
T  9351340 tctatactttcaattgcattctccaaagcctcaaatccttcatgtgcaacatttgaaccttcacttataag 9351410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 9292373 - 9292439
Alignment:
Q  8 ttctatactttcaattgcattcttcaaagcctcaaatctttcatgtgcaacattagaaccttcactt 74  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||    
T  9292373 ttctatactttcaattgcattctccaaagcctcaaatctttcatgtgcaacaatagaaccatcactt 9292439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 9304813 - 9304879
Alignment:
Q  8 ttctatactttcaattgcattcttcaaagcctcaaatctttcatgtgcaacattagaaccttcactt 74  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||    
T  9304813 ttctatactttcaattgcattctcgaaagcctcaaatctttcatgtgcaacattagaatcttcactt 9304879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 9361470 - 9361406
Alignment:
Q  16 tttcaattgcattcttcaaagcctcaaatctttcatgtgcaacattagaaccttcacttataaga 80  Q
    |||||||||| |||| |||||||||||||||||  ||||||||||||||||||||||||| ||||    
T  9361470 tttcaattgctttctccaaagcctcaaatcttttttgtgcaacattagaaccttcacttaaaaga 9361406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 27495363 - 27495431
Alignment:
Q  97 tataattcggaaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggaggg 167  Q
    |||||| |||||||||||||  |||| |||||||||||||||||||||| ||| |||||||||||||||||    
T  27495363 tataatccggaaatgacaaa--cattccggattatataatccgaacagcgccagaatgcctatttggaggg 27495431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 389
Target Start/End: Original strand, 23247908 - 23247985
Alignment:
Q  312 tgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaacataacgatg 389  Q
    |||||||||||||| || || | |||||||||||| ||||||||| |||||| |||  |||| |||||||||||||||    
T  23247908 tgacatatttctatcggcaggctaactggatcgagttcataaaaatcttttcggatccagatctgcaacataacgatg 23247985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 9129393 - 9129325
Alignment:
Q  97 tataattcggaaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggag 165  Q
    |||||| || |||||||||||||||  |||||||||||||| |||| |||||| ||||| | |||||||    
T  9129393 tataatccgaaaatgacaaaaacatcccggattatataatctgaactgcaccataatgcatgtttggag 9129325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 9368282 - 9368242
Alignment:
Q  16 tttcaattgcattcttcaaagcctcaaatctttcatgtgca 56  Q
    ||||||||||||||| ||||||||||||||||||| |||||    
T  9368282 tttcaattgcattctccaaagcctcaaatctttcacgtgca 9368242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 383
Target Start/End: Complemental strand, 17978903 - 17978779
Alignment:
Q  259 tagggtggtgtttgaagaagagcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaacc 358  Q
    |||| ||||||| ||||| | | ||||||||| | |||||| | |||||||| | | |||| |||||  | | ||||||| ||||||| |||||||||||    
T  17978903 taggatggtgttcgaagaggtgattttgaactcgatccagctggcctgccaactaatatatatctatcagaaaaccaactagatcgagctcataaaaacc 17978804  T
Q  359 ttttcagatttagatttgcaacata 383  Q
    ||||| |||| | || |||||||||    
T  17978803 ttttcggattcaaatatgcaacata 17978779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 17979075 - 17979015
Alignment:
Q  104 cggaaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttgga 164  Q
    |||| |||| ||||||||| |||||||||||||| |||||  |||| ||||||||||||||    
T  17979075 cggatatgataaaaacattccggattatataatctgaacaaaaccagaatgcctatttgga 17979015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 27495515 - 27495571
Alignment:
Q  254 tattatagggtggtgtttgaagaagagcttttgaacttggtccagccgacctgccaa 310  Q
    ||||||||| ||||||| ||||| | ||||||||||| | |||||| ||||||||||    
T  27495515 tattataggatggtgttcgaagaggtgcttttgaactcgatccagctgacctgccaa 27495571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 280 - 405
Target Start/End: Original strand, 1377744 - 1377869
Alignment:
Q  280 gcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaa 379  Q
    ||||||||||| | || ||| | |||||||| |||||||||||||| || || |||||||||||||| |||||||||||||||| ||||   || |||||    
T  1377744 gcttttgaactcgatctagctggcctgccaactgacatatttctatcggaaggccaactggatcgagctcataaaaaccttttcggattctaatctgcaa 1377843  T
Q  380 cataacgatgaaagacaaggtgtttc 405  Q
    ||||||| ||||||||||||||||||    
T  1377844 cataacgttgaaagacaaggtgtttc 1377869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 254 - 397
Target Start/End: Original strand, 1852518 - 1852661
Alignment:
Q  254 tattatagggtggtgtttgaagaagagcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataa 353  Q
    |||| |||| ||||||| ||||| | | ||||||||| | || ||| | |||||||| |||||||||| ||| || || |||| | ||||||| ||||||    
T  1852518 tattctaggatggtgttcgaagaggtgtttttgaactcgatctagctggcctgccaactgacatatttatatcggcaggccaagtagatcgagttcataa 1852617  T
Q  354 aaaccttttcagatttagatttgcaacataacgatgaaagacaa 397  Q
    |||||||||| |||| |||| |||||||||||||||||||||||    
T  1852618 aaaccttttcggattcagatatgcaacataacgatgaaagacaa 1852661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 107 - 165
Target Start/End: Original strand, 1852362 - 1852420
Alignment:
Q  107 aaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggag 165  Q
    |||||||||||||||| ||| ||||||||||| |||| ||||| |||||||||||||||    
T  1852362 aaatgacaaaaacattccggtttatataatccaaacaacaccagaatgcctatttggag 1852420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 414
Target Start/End: Original strand, 18500731 - 18500862
Alignment:
Q  281 cttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaac 380  Q
    |||||| ||||| |||||| | |||| ||| ||||||||||| || || ||  |||||||||| || |||||  ||||||  | || ||| || ||||||    
T  18500731 cttttgtacttgatccagctggcctgtcaactgacatatttcgatcggcaggtcaactggatcaagttcataggaacctt--cggaattaaatctgcaac 18500828  T
Q  381 ataacgatgaaagacaaggtgtttcaagcggatt 414  Q
    |||| |||||||| |||||||||||||| |||||    
T  18500829 ataatgatgaaaggcaaggtgtttcaagaggatt 18500862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 26188134 - 26188081
Alignment:
Q  115 aaaacatttcggattatataatccgaacagcaccaaaatgcctatttggagggg 168  Q
    |||||||| |||||| ||||||||| ||| ||||| ||||||||||||||||||    
T  26188134 aaaacattccggattgtataatccggacaacaccataatgcctatttggagggg 26188081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 1377561 - 1377621
Alignment:
Q  107 aaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggaggg 167  Q
    |||||||||||| ||| | ||||||||||| |||||| || || |||||||||||||||||    
T  1377561 aaatgacaaaaagattccagattatataattcgaacaacatcagaatgcctatttggaggg 1377621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 254 - 414
Target Start/End: Complemental strand, 18803 - 18643
Alignment:
Q  254 tattatagggtggtgtttgaagaagagcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataa 353  Q
    |||| |||| ||||||| ||||| | ||||||||||| | |||||| | | |||||| | |||||||||||| |  |  |||||||||||||  ||||||    
T  18803 tattctaggatggtgttcgaagaggtgcttttgaactcgatccagctggcttgccaactaacatatttctatcgccaagccaactggatcgaattcataa 18704  T
Q  354 aaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtttcaagcggatt 414  Q
    |||| ||||  |||| |||| |||||||||||||||||||||||||||||||||| |||||    
T  18703 aaacttttttggattcagatatgcaacataacgatgaaagacaaggtgtttcaagaggatt 18643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 209
Target Start/End: Complemental strand, 18957 - 18846
Alignment:
Q  97 tataattcggaaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggaggggnnnnnnnnagagagatttcatggaaaat 196  Q
    |||||| || ||||||||||||||||  |||||||||||| |||||||||||| |||| |||||| || |||        | ||||||||||||||||||    
T  18957 tataatccgaaaatgacaaaaacattctggattatataattcgaacagcaccagaatgtctatttaga-gggttttttttaaagagatttcatggaaaat 18859  T
Q  197 aagtaatcaatgc 209  Q
    ||||||| |||||    
T  18858 aagtaataaatgc 18846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 304 - 414
Target Start/End: Original strand, 28547247 - 28547357
Alignment:
Q  304 ctgccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtt 403  Q
    ||||||| |||||||||||||| || || |||||||||||||| ||||||||||| |||| || | |||| |||||||||| ||||||||| ||||||||    
T  28547247 ctgccaactgacatatttctatcggaaggccaactggatcgagttcataaaaaccatttcggaatcagatctgcaacataatgatgaaagataaggtgtt 28547346  T
Q  404 tcaagcggatt 414  Q
    ||||| |||||    
T  28547347 tcaagaggatt 28547357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 333 - 417
Target Start/End: Complemental strand, 25138331 - 25138249
Alignment:
Q  333 ccaactggatcgaggtcataaaaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtttcaagcggattata 417  Q
    |||||||||||||| |||||||||||||||| |||| |||||||||||||||  |||||| ||||||||||||||||||||||||    
T  25138331 ccaactggatcgagttcataaaaaccttttcggattcagatttgcaacataa--atgaaacacaaggtgtttcaagcggattata 25138249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 254 - 396
Target Start/End: Original strand, 20818893 - 20819035
Alignment:
Q  254 tattatagggtggtgtttgaagaagagcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataa 353  Q
    |||| |||| ||||||| ||||| | ||||||||||| | |||| | ||| |||||| |||||||||||||| || |  | |||||||||||| ||||||    
T  20818893 tattctaggatggtgttcgaagaggtgcttttgaactcgatccaactgacttgccaactgacatatttctatcggcatgcaaactggatcgagttcataa 20818992  T
Q  354 aaaccttttcagatttagatttgcaacataacgatgaaagaca 396  Q
    |||| ||||   ||| |||| ||||||||||||||||||||||    
T  20818993 aaacttttttgaattcagatctgcaacataacgatgaaagaca 20819035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 25138578 - 25138508
Alignment:
Q  97 tataattcggaaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggaggg 167  Q
    |||||| || |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||    
T  25138578 tataatccgaaaatgacaaaaacattccggattatataatccgaacatcaccataatgcctatttggaggg 25138508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 20818731 - 20818786
Alignment:
Q  112 acaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggaggg 167  Q
    ||||||||||| ||||||||| ||||| |||| |||||||||||||||||||||||    
T  20818731 acaaaaacattccggattatacaatccaaacaacaccaaaatgcctatttggaggg 20818786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 380
Target Start/End: Original strand, 17520257 - 17520334
Alignment:
Q  303 cctgccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaac 380  Q
    ||||||||  |||||||||| ||||  |||||||||||||| || |||||| ||||| ||| || |||||| ||||||    
T  17520257 cctgccaaccgacatatttcaattgacagaccaactggatcaagttcataagaacctattcggaattagatctgcaac 17520334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 305 - 417
Target Start/End: Original strand, 11457445 - 11457557
Alignment:
Q  305 tgccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgttt 404  Q
    |||||| |||||||||||||| || |   ||||  ||||||| ||||||||||||||||||||| | || ||||||||||| ||||||||||||||||||    
T  11457445 tgccaactgacatatttctatcggcatgtcaacatgatcgagttcataaaaaccttttcagattcaaatatgcaacataacaatgaaagacaaggtgttt 11457544  T
Q  405 caagcggattata 417  Q
    |||||||| ||||    
T  11457545 caagcggaatata 11457557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 254 - 380
Target Start/End: Original strand, 28284808 - 28284934
Alignment:
Q  254 tattatagggtggtgtttgaagaagagcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataa 353  Q
    |||| |||| ||||||| ||||| | ||||||||||||| ||| || | |||||||| ||| ||||||| || || || ||||||||||| || ||||||    
T  28284808 tattctaggatggtgttcgaagaggtgcttttgaacttgatcctgcaggcctgccaactgatatatttcgatcggcagcccaactggatcaagttcataa 28284907  T
Q  354 aaaccttttcagatttagatttgcaac 380  Q
    |||||| ||| |  |||||||||||||    
T  28284908 aaacctcttcgggattagatttgcaac 28284934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 31467396 - 31467352
Alignment:
Q  12 atactttcaattgcattcttcaaagcctcaaatctttcatgtgca 56  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||    
T  31467396 atactttcaattgcattctccaaagcctccaatctttcatgtgca 31467352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 31477242 - 31477200
Alignment:
Q  12 atactttcaattgcattcttcaaagcctcaaatctttcatgtg 54  Q
    ||||||||||||||||||| ||||||||| |||||||||||||    
T  31477242 atactttcaattgcattctccaaagcctctaatctttcatgtg 31477200  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 11457224 - 11457293
Alignment:
Q  97 tataattcggaaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggagg 166  Q
    |||||| |||||||||||||| ||||  ||||||||||||  |||||  |||| ||||||| ||||||||    
T  11457224 tataatccggaaatgacaaaagcattctggattatataatttgaacaataccataatgcctttttggagg 11457293  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 31502606 - 31502562
Alignment:
Q  12 atactttcaattgcattcttcaaagcctcaaatctttcatgtgca 56  Q
    |||||||||||| | |||| ||||||||| |||||||||||||||    
T  31502606 atactttcaattactttctccaaagcctccaatctttcatgtgca 31502562  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 380
Target Start/End: Complemental strand, 38621318 - 38621202
Alignment:
Q  264 tggtgtttgaagaagagcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttc 363  Q
    ||||||| ||||| | ||||||||||||| ||| || | | |||||| ||||||||||| || || |  |||||| |||| || |||||| ||||| |||    
T  38621318 tggtgttcgaagatgtgcttttgaacttgatcctgcaggcatgccaactgacatatttcaatcggcatgccaactagatcaagttcataataacctattc 38621219  T
Q  364 agatttagatttgcaac 380  Q
    ||  |||||| ||||||    
T  38621218 aggattagatctgcaac 38621202  T

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Target: scaffold0160 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 303 - 414
Target Start/End: Complemental strand, 17019 - 16908
Alignment:
Q  303 cctgccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgt 402  Q
    |||||||| |||||||||| |||  | ||  |||||||||| || |||||||||||||||| || | | || |||| |||||||||||||||||||||||    
T  17019 cctgccaaatgacatatttatatccgcaggtcaactggatcaagttcataaaaaccttttcggaatcatatctgcagcataacgatgaaagacaaggtgt 16920  T
Q  403 ttcaagcggatt 414  Q
    |||||| |||||    
T  16919 ttcaagaggatt 16908  T

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Target: scaffold0001 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 414
Target Start/End: Complemental strand, 426947 - 426865
Alignment:
Q  332 accaactggatcgaggtcataaaaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtttcaagcggatt 414  Q
    |||| |||||||||| ||||||||||||||||  ||| ||||||||||||||||||||||||  ||||||||| ||| |||||    
T  426947 accacctggatcgagttcataaaaaccttttcgaattcagatttgcaacataacgatgaaagggaaggtgtttgaagaggatt 426865  T

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Target: scaffold0210 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 342 - 414
Target Start/End: Complemental strand, 7849 - 7777
Alignment:
Q  342 tcgaggtcataaaaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtttcaagcggatt 414  Q
    ||||| |||||||||||||||  |||| |||| |||||| |||||||||||||||| |||||||||| |||||    
T  7849 tcgagttcataaaaacctttttggattcagatatgcaacttaacgatgaaagacaatgtgtttcaagaggatt 7777  T

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Target: scaffold0048 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 414
Target Start/End: Original strand, 52237 - 52345
Alignment:
Q  306 gccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtttc 405  Q
    ||||| ||||||||||| || ||||| ||||||||||| || ||| ||| |||  ||| |||| | || |||||||||||||||||||| || |||||||    
T  52237 gccaactgacatatttcgatcggtaggccaactggatcaagttcaaaaacaccaattcggattcacatctgcaacataacgatgaaagaaaatgtgtttc 52336  T
Q  406 aagcggatt 414  Q
    ||| |||||    
T  52337 aagaggatt 52345  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 39807223 - 39807154
Alignment:
Q  97 tataattcggaaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggagg 166  Q
    |||||| | |||||||||||||||||  | ||||||||||||||||| ||| | ||| ||||||||||||    
T  39807223 tataatccagaaatgacaaaaacattctgaattatataatccgaacaacactagaatacctatttggagg 39807154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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