View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4806_high_10 (Length: 426)

Name: NF4806_high_10
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4806_high_10
NF4806_high_10
[»] chr4 (6 HSPs)
chr4 (24-412)||(11557210-11557598)
chr4 (140-412)||(18219215-18219487)
chr4 (18-148)||(18219504-18219634)
chr4 (17-142)||(12137400-12137526)
chr4 (140-284)||(12137549-12137693)
chr4 (140-203)||(11097203-11097262)
[»] chr2 (8 HSPs)
chr2 (140-412)||(44584929-44585201)
chr2 (140-336)||(23652841-23653037)
chr2 (20-145)||(23653057-23653182)
chr2 (17-148)||(24787447-24787579)
chr2 (250-412)||(24787584-24787745)
chr2 (17-148)||(44585218-44585337)
chr2 (334-412)||(23652717-23652795)
chr2 (69-148)||(29637222-29637301)
[»] chr7 (19 HSPs)
chr7 (140-412)||(11656540-11656812)
chr7 (140-412)||(22613508-22613780)
chr7 (141-404)||(13476076-13476339)
chr7 (24-148)||(13476357-13476482)
chr7 (17-148)||(22613797-22613928)
chr7 (24-145)||(11090603-11090725)
chr7 (20-147)||(11656395-11656522)
chr7 (20-141)||(48377927-48378049)
chr7 (141-202)||(11090746-11090807)
chr7 (20-148)||(15866019-15866149)
chr7 (20-142)||(16061750-16061873)
chr7 (24-85)||(11085361-11085422)
chr7 (24-85)||(11093099-11093160)
chr7 (28-148)||(4530467-4530587)
chr7 (140-284)||(16061896-16062041)
chr7 (140-284)||(48378073-48378218)
chr7 (144-287)||(15865854-15865998)
chr7 (140-285)||(4530306-4530450)
chr7 (250-283)||(11090798-11090831)
[»] chr3 (10 HSPs)
chr3 (147-412)||(17792296-17792561)
chr3 (147-412)||(19100736-19101001)
chr3 (140-412)||(15959288-15959557)
chr3 (17-148)||(17792140-17792272)
chr3 (17-148)||(19100580-19100712)
chr3 (17-140)||(14480353-14480476)
chr3 (21-140)||(15959582-15959700)
chr3 (25-148)||(14053795-14053919)
chr3 (25-132)||(14061620-14061728)
chr3 (195-311)||(14058419-14058535)
[»] scaffold1001 (2 HSPs)
scaffold1001 (141-372)||(2452-2683)
scaffold1001 (18-148)||(2304-2434)
[»] scaffold0708 (2 HSPs)
scaffold0708 (141-353)||(837-1049)
scaffold0708 (24-148)||(694-819)
[»] chr5 (2 HSPs)
chr5 (17-140)||(24830748-24830871)
chr5 (99-140)||(14137136-14137177)
[»] chr6 (1 HSPs)
chr6 (17-140)||(7681333-7681456)
[»] scaffold0061 (4 HSPs)
scaffold0061 (20-142)||(26669-26792)
scaffold0061 (20-142)||(17611-17734)
scaffold0061 (140-284)||(17443-17588)
scaffold0061 (140-284)||(26501-26646)
[»] scaffold0003 (1 HSPs)
scaffold0003 (14-142)||(131743-131872)
[»] scaffold1269 (2 HSPs)
scaffold1269 (25-148)||(1224-1348)
scaffold1269 (169-286)||(1394-1512)
[»] chr1 (5 HSPs)
chr1 (17-148)||(10388882-10389014)
chr1 (299-410)||(24853665-24853776)
chr1 (298-412)||(24853495-24853609)
chr1 (142-287)||(51625656-51625802)
chr1 (102-142)||(51625827-51625867)
[»] scaffold0063 (2 HSPs)
scaffold0063 (20-142)||(27016-27139)
scaffold0063 (140-284)||(26848-26993)
[»] scaffold0218 (1 HSPs)
scaffold0218 (25-141)||(15626-15743)
[»] chr8 (2 HSPs)
chr8 (20-148)||(29295118-29295248)
chr8 (145-308)||(29295270-29295433)
[»] scaffold0091 (2 HSPs)
scaffold0091 (20-142)||(30303-30426)
scaffold0091 (140-284)||(30449-30594)
[»] scaffold0074 (2 HSPs)
scaffold0074 (141-202)||(1028-1089)
scaffold0074 (80-145)||(941-1007)


Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 24 - 412
Target Start/End: Original strand, 11557210 - 11557598
Alignment:
Q  24 ctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacattttgaatctactctcgtcattcgttctct 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11557210 ctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacattttaaatctactctcgtcattcgttctct 11557309  T
Q  124 ccatcactacatctttcattctaatttaagtgtttacccctctactaatattcctcgtagcgtcatccatattatctttcacttcctatttccaattcat 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11557310 ccatcactacatctttcattctaatttaagtgtttacccctctactaatattcctcgtagcgtcatccatattatctttcacttcctatttccaattcat 11557409  T
Q  224 cttgacattcttaatttctcatagactattatcttcggttcatatttaagcttgttattatcctaaaatgatcacttctacttatgctcgaacaccctct 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||    
T  11557410 cttgacattcttaatttctcatagactattatcttcggttcatatttaagcttgttaatatcctgaggtgatcacttctacttatgctcgaacaccctct 11557509  T
Q  324 ctcatctatatatgtaatttaggggtccttacatttaattgacacactaatatatttctgaaaatcactactaattttataaatgttga 412  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11557510 ctcatctatatatgtaatttaggggtccttacatttaatttacacactaatatatttctgaaaatcactactaattttataaatgttga 11557598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 140 - 412
Target Start/End: Complemental strand, 18219487 - 18219215
Alignment:
Q  140 cattctaatttaagtgtttacccctctactaatattcctcgtagcgtcatccatattatctttcacttcctatttccaattcatcttgacattcttaatt 239  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||| | ||||||||||    
T  18219487 cattctaatttaagtgtttacccctctactaatattcctcgcagcgtcatccatattatctttcactttctatttccaagtcatcttaaaattcttaatt 18219388  T
Q  240 tctcatagactattatcttcggttcatatttaagcttgttattatcctaaaatgatcacttctacttatgctcgaacaccctctctcatctatatatgta 339  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||| | |  | | ||||||||||||||||||||||| ||| ||||||||||||||||    
T  18219387 tctcatagactatgatcttcggttcatattaaagcttgttattatcttgaggtaagcacttctacttatgctcgaacacactccctcatctatatatgta 18219288  T
Q  340 atttaggggtccttacatttaattgacacactaatatatttctgaaaatcactactaattttataaatgttga 412  Q
    ||||| ||||||||| ||||| || |||||||||||||||||| |||||||||||||  |||||| |||||||    
T  18219287 atttacgggtccttaaatttactttacacactaatatatttcttaaaatcactactacctttatagatgttga 18219215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 18219634 - 18219504
Alignment:
Q  18 agtaacctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacattttgaatctactctcgtcattcg 117  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||| || ||||||||||||    
T  18219634 agtaacctctcatcattaaacaacatcttacacaagcatatgtacacatcacattcctttgttattcattactacatttggaatatattctcgtcattcg 18219535  T
Q  118 ttctctccatcactacatctttcattctaat 148  Q
    |||||||||||||||||| ||||||| ||||    
T  18219534 ttctctccatcactacatttttcattttaat 18219504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 12137400 - 12137526
Alignment:
Q  17 cagtaacctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacatttt-gaatctactctcgtcatt 115  Q
    ||||||| |||||||||||| ||||||||||  |||||||||| ||| ||||||||  ||| |||||||||||| |||||| ||||  ||||   |||||    
T  12137400 cagtaacttctcatcattaatcaacatcttatgcaagcatatgtacaaatcacatttctttattattcattactgcattttagaatagactcctatcatt 12137499  T
Q  116 cgttctctccatcactacatctttcat 142  Q
    | |||||||||| ||||||||||||||    
T  12137500 cattctctccattactacatctttcat 12137526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 140 - 284
Target Start/End: Original strand, 12137549 - 12137693
Alignment:
Q  140 cattctaatttaagtgtttacccctctactaatattcctcgtagcgtcatccatattatctttcacttcctatttccaattcatcttgacattcttaatt 239  Q
    ||||||||| ||| |||||||| || || ||||||||||  || |||| |||||||||||| |||||| ||||  ||||  || ||||||||  |||  |    
T  12137549 cattctaatataaatgtttacctctttattaatattccttataacgtcttccatattatctctcactttctatggccaagccaccttgacatcattagat 12137648  T
Q  240 tctcatagactattatcttcggttcatatttaagcttgttattat 284  Q
    ||||| |  ||| ||||||| ||||||||||||||||||||||||    
T  12137649 tctcacaagctactatcttcagttcatatttaagcttgttattat 12137693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 203
Target Start/End: Complemental strand, 11097262 - 11097203
Alignment:
Q  140 cattctaatttaagtgtttacccctctactaatattcctcgtagcgtcatccatattatctttc 203  Q
    ||||||| |||||||||||    ||||||||||||||||||||||||||||| |||||||||||    
T  11097262 cattctagtttaagtgttt----ctctactaatattcctcgtagcgtcatccgtattatctttc 11097203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 140 - 412
Target Start/End: Complemental strand, 44585201 - 44584929
Alignment:
Q  140 cattctaatttaagtgtttacccctctactaatattcctcgtagcgtcatccatattatctttcacttcctatttccaattcatcttgacattcttaatt 239  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  44585201 cattctaatttaagtttttacccctctactaatattcctcgtagcgtcatccatattatctttcacttcctattttcaagtcatcttgacattcttaatt 44585102  T
Q  240 tctcatagactattatcttcggttcatatttaagcttgttattatcctaaaatgatcacttctacttatgctcgaacaccctctctcatctatatatgta 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |  | ||||||||||||||||||| ||||| | | ||||||||||||||||    
T  44585101 tctcatagactattatcttcggttcatatttaagcttgttattatcttgaggtaatcacttctacttatgctcaaacacaccccctcatctatatatgta 44585002  T
Q  340 atttaggggtccttacatttaattgacacactaatatatttctgaaaatcactactaattttataaatgttga 412  Q
    ||||||||||||||||||||| || |||||||||||||||||| ||||||||||||| ||||||| |||||||    
T  44585001 atttaggggtccttacatttactttacacactaatatatttcttaaaatcactactacttttatagatgttga 44584929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 140 - 336
Target Start/End: Complemental strand, 23653037 - 23652841
Alignment:
Q  140 cattctaatttaagtgtttacccctctactaatattcctcgtagcgtcatccatattatctttcacttcctatttccaattcatcttgacattcttaatt 239  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  23653037 cattctaatttaagtctttacctctctactaatattcctcgtagcgtcatccatattatctttcacttcctatttcctagtcatcttgacattcttaatt 23652938  T
Q  240 tctcatagactattatcttcggttcatatttaagcttgttattatcctaaaatgatcacttctacttatgctcgaacaccctctctcatctatatat 336  Q
    ||||||| |||||||||| |||||||||||||||||||||| |||| |    | ||||||||| ||||||||||||||| ||| ||||| |||||||    
T  23652937 tctcatatactattatctccggttcatatttaagcttgttaatatcttgtggtaatcacttcttcttatgctcgaacacactccctcatatatatat 23652841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 23653182 - 23653057
Alignment:
Q  20 taacctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacattttgaatctactctcgtcattcgtt 119  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||    
T  23653182 taacctctcatcattaaacaacatcttacacgagcatatgtacacatcacattactttgttattcattactacatttggaatctactctcgtcattcgtt 23653083  T
Q  120 ctctccatcactacatctttcattct 145  Q
    ||||||||||||||||||||||||||    
T  23653082 ctctccatcactacatctttcattct 23653057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 24787447 - 24787579
Alignment:
Q  17 cagtaacctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacatttt-gaatctactctcgtcatt 115  Q
    |||| ||||||||||||||||||||||||||||| || ||||| |||||||| |||| ||||||||||||||||||||||| |||||||| |||| ||||    
T  24787447 cagtgacctctcatcattaaacaacatcttacacgagaatatgtacacatcaaattcctttgttattcattactacattttggaatctaccctcgacatt 24787546  T
Q  116 cgttctctccatcactacatctttcattctaat 148  Q
    |||||  ||||| ||||||||||||||||||||    
T  24787547 cgttccatccattactacatctttcattctaat 24787579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 250 - 412
Target Start/End: Original strand, 24787584 - 24787745
Alignment:
Q  250 tattatcttcggttcatatttaagcttgttattatcctaaaatgatcacttctacttatgctcgaacaccctctctcatctatatatgtaatttaggggt 349  Q
    |||||| || |||||||||||||||||||||||||||| |  | |||||||||| ||||||| |||||| |||  |||||||||||||||||||||||||    
T  24787584 tattatttttggttcatatttaagcttgttattatcctgaggtaatcacttctatttatgcttgaacacactccatcatctatatatgtaatttaggggt 24787683  T
Q  350 ccttacatttaattgacacactaatatatttctgaaaatcactactaattttataaatgttga 412  Q
    ||||||||||| ||  |||||||||  |||| | ||||| |||| || ||||||| |||||||    
T  24787684 ccttacatttactt-tcacactaatggatttattaaaatgactattacttttatagatgttga 24787745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 44585337 - 44585218
Alignment:
Q  17 cagtaacctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacattttgaatctactctcgtcattc 116  Q
    |||||||||||||||||||||||   ||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||         ||    
T  44585337 cagtaacctctcatcattaaaca---tcttacacaagcatatgtacacatcacattcctttgttattcattactacatttggaatctac---------tc 44585250  T
Q  117 gttctctccatcactacatctttcattctaat 148  Q
    |||||||||||||| |||||||||||||||||    
T  44585249 gttctctccatcaccacatctttcattctaat 44585218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 412
Target Start/End: Complemental strand, 23652795 - 23652717
Alignment:
Q  334 tatgtaatttaggggtccttacatttaattgacacactaatatatttctgaaaatcactactaattttataaatgttga 412  Q
    |||||| |||||||||||||||||||| || ||||||||||  |||||| ||||||||||||| ||||||| |||||||    
T  23652795 tatgtattttaggggtccttacatttactttacacactaatggatttcttaaaatcactactacttttatagatgttga 23652717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 29637222 - 29637301
Alignment:
Q  69 cattcttttgttattcattactacattttgaatctactctcgtcattcgttctctccatcactacatctttcattctaat 148  Q
    ||||| || |||| ||| |||||||||| ||||| || ||| ||||| ||||||||||| |||||||||||||| |||||    
T  29637222 cattccttagttaatcaatactacatttagaatccacactcatcattagttctctccattactacatctttcatcctaat 29637301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 140 - 412
Target Start/End: Original strand, 11656540 - 11656812
Alignment:
Q  140 cattctaatttaagtgtttacccctctactaatattcctcgtagcgtcatccatattatctttcacttcctatttccaattcatcttgacattcttaatt 239  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||| ||| ||||||    
T  11656540 cattctaatttaagtgtttacctctctactaatattcctcgtagcatcatccatattatctctcacttcctatttccaagtcatcttgaaattattaatt 11656639  T
Q  240 tctcatagactattatcttcggttcatatttaagcttgttattatcctaaaatgatcacttctacttatgctcgaacaccctctctcatctatatatgta 339  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| | |  | ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  11656640 tctcataggctattatcttcggttcatatttaagcttgttattatcttgacgtaatcacttctacttatgctcgaacacactccctcatctatatatgta 11656739  T
Q  340 atttaggggtccttacatttaattgacacactaatatatttctgaaaatcactactaattttataaatgttga 412  Q
    |||||| |||| ||||||||| || ||||||||||   ||||| ||||||||||||| ||||||| |||||||    
T  11656740 atttagaggtcattacatttactttacacactaatggctttcttaaaatcactactacttttatagatgttga 11656812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 140 - 412
Target Start/End: Complemental strand, 22613780 - 22613508
Alignment:
Q  140 cattctaatttaagtgtttacccctctactaatattcctcgtagcgtcatccatattatctttcacttcctatttccaattcatcttgacattcttaatt 239  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||    
T  22613780 cattctaatttaagtgtttacctctctactaatattcctcgtagcgtcatccatattatctttcacttcctatttccaagttatcttgaaattattaatt 22613681  T
Q  240 tctcatagactattatcttcggttcatatttaagcttgttattatcctaaaatgatcacttctacttatgctcgaacaccctctctcatctatatatgta 339  Q
    |||||||| | ||||||||||||||||||||||||||||||||||| | |  | | ||||||||||||||||||||||| ||| ||||||||||||||||    
T  22613680 tctcataggcaattatcttcggttcatatttaagcttgttattatcttgatgtaagcacttctacttatgctcgaacacactccctcatctatatatgta 22613581  T
Q  340 atttaggggtccttacatttaattgacacactaatatatttctgaaaatcactactaattttataaatgttga 412  Q
    |||||| |||| ||||||||| || ||||||||||   ||||| ||||||||||||| ||||||| |||||||    
T  22613580 atttagaggtcattacatttactttacacactaatggctttcttaaaatcactactatttttatagatgttga 22613508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 141 - 404
Target Start/End: Complemental strand, 13476339 - 13476076
Alignment:
Q  141 attctaatttaagtgtttacccctctactaatattcctcgtagcgtcatccatattatctttcacttcctatttccaattcatcttgacattcttaattt 240  Q
    ||||||||||||||||||||| ||||||||||||| || |||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||  ||    
T  13476339 attctaatttaagtgtttacctctctactaatatttcttgtagggtcatccatattatctttcacttcctattttcaagtcatcttgacattcttagatt 13476240  T
Q  241 ctcatagactattatcttcggttcatatttaagcttgttattatcctaaaatgatcacttctacttatgctcgaacaccctctctcatctatatatgtaa 340  Q
    ||||||| |||||| ||| |||||||||||||||||||||  | | | |  | ||||||||||||||||||| || || ||| ||||| |||||||||||    
T  13476239 ctcataggctattaactttggttcatatttaagcttgttaccaccttgaggtcatcacttctacttatgctcaaatacactccctcatatatatatgtaa 13476140  T
Q  341 tttaggggtccttacatttaattgacacactaatatatttctgaaaatcactactaattttata 404  Q
    |||||||||||||||||||| || | ||| ||||   ||||| ||||||||||||| |||||||    
T  13476139 tttaggggtccttacatttactttatacaataatgactttcttaaaatcactactacttttata 13476076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 13476482 - 13476357
Alignment:
Q  24 ctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacatttt-gaatctactctcgtcattcgttctc 122  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  13476482 ctctcatcattaaacaacatcttacacgagcatatgtacacatcacattcctttgttattcattactacattttggaatctactctcgtctttcgttctc 13476383  T
Q  123 tccatcactacatctttcattctaat 148  Q
    ||||| |||||| |||||||||||||    
T  13476382 tccattactacacctttcattctaat 13476357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 22613928 - 22613797
Alignment:
Q  17 cagtaacctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacattttgaatctactctcgtcattc 116  Q
    |||||||||||||||| ||||||||||||||||| | |||||| ||||||||||||| ||||||||||||||||| |||| |||||||||||| ||||||    
T  22613928 cagtaacctctcatcagtaaacaacatcttacacgaacatatgtacacatcacattcctttgttattcattactaaatttggaatctactctcatcattc 22613829  T
Q  117 gttctctccatcactacatctttcattctaat 148  Q
    ||||||||||| ||||| ||||||||||||||    
T  22613828 gttctctccattactacctctttcattctaat 22613797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 24 - 145
Target Start/End: Original strand, 11090603 - 11090725
Alignment:
Q  24 ctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacatttt-gaatctactctcgtcattcgttctc 122  Q
    |||||||||||||||||||||||| || |||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  11090603 ctctcatcattaaacaacatcttaaacgagcatatgtacacatcacattcctttgttattcattactacattttggaatctactctcgtctttcgttctc 11090702  T
Q  123 tccatcactacatctttcattct 145  Q
    ||||| |||||| || |||||||    
T  11090703 tccattactacacctctcattct 11090725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 11656395 - 11656522
Alignment:
Q  20 taacctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacattttgaatctactctcgtcattcgtt 119  Q
    |||||||| |||| |||| |||||||||||| | |||||| ||||||||||||| ||||||||||||| ||| |||| ||||||| ||||||||||| ||    
T  11656395 taacctcttatcagtaaataacatcttacacgaacatatgtacacatcacattcctttgttattcattgctaaatttggaatctattctcgtcattcatt 11656494  T
Q  120 ctctccatcactacatctttcattctaa 147  Q
     ||||||| ||||| |||||||||||||    
T  11656495 ttctccattactacctctttcattctaa 11656522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 48377927 - 48378049
Alignment:
Q  20 taacctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacatttt-gaatctactctcgtcattcgt 118  Q
    |||| ||||| |||||| |||||||||| || |||||||| |||||||| |||| || |||| || ||||| |||||| |||||||||||||||||||||    
T  48377927 taacttctcaccattaatcaacatcttatacgagcatatgtacacatcatattccttcgttactcgttactgcattttagaatctactctcgtcattcgt 48378026  T
Q  119 tctctccatcactacatctttca 141  Q
    ||||||||| ||||| |||||||    
T  48378027 tctctccattactacgtctttca 48378049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 11090746 - 11090807
Alignment:
Q  141 attctaatttaagtgtttacccctctactaatattcctcgtagcgtcatccatattatcttt 202  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  11090746 attctaatttaagtgtttacctctctactaatatttctcgtagcgtcatccatattatcttt 11090807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 15866149 - 15866019
Alignment:
Q  20 taacctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacatttt--gaatctactctcgtcattcg 117  Q
    |||| ||||| |||||| | |||||||| || |||||||| |||||||| |||| || |||| |||||||| || |||  |||||| ||||||||||| |    
T  15866149 taacttctcaccattaatcgacatcttatacgagcatatgtacacatcatattccttcgttagtcattactgcaattttagaatcttctctcgtcatttg 15866050  T
Q  118 ttctctccatcactacatctttcattctaat 148  Q
    |||||||||| || || ||||||||||||||    
T  15866049 ttctctccattaccacgtctttcattctaat 15866019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 16061750 - 16061873
Alignment:
Q  20 taacctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacatttt-gaatctactctcgtcattcgt 118  Q
    |||| ||||| |||||| |||||||||| || |||||||| ||||||||  ||| || |||| || ||||| |||||| ||||||||||||  |||||||    
T  16061750 taacttctcaccattaatcaacatcttatacgagcatatgtacacatcattttccttcgttactcgttactgcattttagaatctactctcagcattcgt 16061849  T
Q  119 tctctccatcactacatctttcat 142  Q
    ||||||||| ||||| ||||||||    
T  16061850 tctctccattactacgtctttcat 16061873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 11085361 - 11085422
Alignment:
Q  24 ctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattca 85  Q
    |||||||| |||||||||||||||||| |||||||| ||||||||||||| |||||||||||    
T  11085361 ctctcatcgttaaacaacatcttacacgagcatatgtacacatcacattcctttgttattca 11085422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 11093099 - 11093160
Alignment:
Q  24 ctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattca 85  Q
    |||||||| |||||||||||||||||| |||||||| ||||||||||||| |||||||||||    
T  11093099 ctctcatcgttaaacaacatcttacacgagcatatgtacacatcacattcctttgttattca 11093160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 148
Target Start/End: Complemental strand, 4530587 - 4530467
Alignment:
Q  28 catcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacattttg-aatctactctcgtcattcgttctctcca 126  Q
    |||||||||  |||||||||  | ||| |||| ||||||||||||  || || |||||||| | ||||||  ||||||||| ||||||||||||||||||    
T  4530587 catcattaataaacatcttatgcgagcctatgtacacatcacatttcttcgtcattcatta-tgcattttataatctactcccgtcattcgttctctcca 4530489  T
Q  127 tcactacatctttcattctaat 148  Q
    | |||||||||||||| |||||    
T  4530488 ttactacatctttcatcctaat 4530467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 284
Target Start/End: Original strand, 16061896 - 16062041
Alignment:
Q  140 cattctaatttaagtgtttacccctctactaatattcctcgtagcgtcatccata-ttatctttcacttcctatttccaattcatcttgacattcttaat 238  Q
    ||||||||||||||| || ||| ||| | ||||||||||| |||||||  ||||| || |||||||||| |||||| |||  ||||||||||   |||      
T  16061896 cattctaatttaagtattaacctctcgattaatattcctcatagcgtctcccatatttctctttcactttctattttcaagccatcttgacaccattaga 16061995  T
Q  239 ttctcatagactattatcttcggttcatatttaagcttgttattat 284  Q
    |||||||||  || |||| || |||| |||||||||||||||||||    
T  16061996 ttctcataggttactatcctcagttcctatttaagcttgttattat 16062041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 140 - 284
Target Start/End: Original strand, 48378073 - 48378218
Alignment:
Q  140 cattctaatttaagtgtttacccctctactaatattcctcgtagcgtcatccatatt-atctttcacttcctatttccaattcatcttgacattcttaat 238  Q
    ||||||||||||||| || ||| ||| | ||||||||||| |||||||  || |||| || |||||||| |||||| |||   |||||||||   |||      
T  48378073 cattctaatttaagtattaacctctcgattaatattcctcatagcgtctcccgtatttatatttcactttctattttcaagctatcttgacaccattaga 48378172  T
Q  239 ttctcatagactattatcttcggttcatatttaagcttgttattat 284  Q
    |||||||||  || |||| ||||||| |||||||||||||||||||    
T  48378173 ttctcataggttactatcctcggttcctatttaagcttgttattat 48378218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 287
Target Start/End: Complemental strand, 15865998 - 15865854
Alignment:
Q  144 ctaatttaagtgtttacccctctactaatattcctcgtagcgtcatccatatt-atctttcacttcctatttccaattcatcttgacattcttaatttct 242  Q
    ||||||||||| || ||| ||| | ||||||||||  |||| ||  ||||||| ||||||||||| |||||| |||  ||||||||||   |||  ||||    
T  15865998 ctaatttaagtattaacctctcgattaatattccttatagcatctcccatatttatctttcactttctattttcaagccatcttgacaccattagattct 15865899  T
Q  243 catagactattatcttcggttcatatttaagcttgttattatcct 287  Q
    |||||  || |||| ||||||| || |||||||||||||||||||    
T  15865898 cataggttactatcctcggttcctacttaagcttgttattatcct 15865854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 285
Target Start/End: Complemental strand, 4530450 - 4530306
Alignment:
Q  140 cattctaatttaagtgtttacccctctactaatattcctcgtagcgtcatccatattatctttcacttcctatttccaattcatcttgacattcttaatt 239  Q
    |||||||||||||||| ||| | || || ||||||||||| || |||| |||||||||||| ||| || ||||  ||||  || ||||||| || | | |    
T  4530450 cattctaatttaagtgcttaactctatattaatattcctcataacgtcctccatattatctctcaatttctatggccaaggcaccttgaca-tcattagt 4530352  T
Q  240 tctcatagactattatcttcggttcatatttaagcttgttattatc 285  Q
    ||||| |   || |  || |||||||||||||||||||||||||||    
T  4530351 tctcacatgttacttcctccggttcatatttaagcttgttattatc 4530306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Original strand, 11090798 - 11090831
Alignment:
Q  250 tattatcttcggttcatatttaagcttgttatta 283  Q
    ||||||||| ||||||||||||||||||||||||    
T  11090798 tattatctttggttcatatttaagcttgttatta 11090831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 147 - 412
Target Start/End: Original strand, 17792296 - 17792561
Alignment:
Q  147 atttaagtgtttacccctctactaatattcctcgtagcgtcatccatattatctttcacttcctatttccaattcatcttgacattcttaatttctcata 246  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  17792296 atttaagtgtttacctctctactaatattcctcgtagggtcatccatactatctttcacttcctatttccaagtcatcttgacattcataatttctcata 17792395  T
Q  247 gactattatcttcggttcatatttaagcttgttattatcctaaaatgatcacttctacttatgctcgaacaccctctctcatctatatatgtaatttagg 346  Q
    | |||||||||| |||||||||||||| ||||||||||| | |  | || |||||||||||| ||| ||||| ||| |||||||||| ||||||||||||    
T  17792396 ggctattatctttggttcatatttaagtttgttattatcttgaggtaataacttctacttatactcaaacacactccctcatctataaatgtaatttagg 17792495  T
Q  347 ggtccttacatttaattgacacactaatatatttctgaaaatcactactaattttataaatgttga 412  Q
    |||| |||||||||||| |||||| |||  |||||| ||||||||| ||| ||||||| |||||||    
T  17792496 ggtcgttacatttaatttacacaccaatggatttcttaaaatcacttctacttttatagatgttga 17792561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 147 - 412
Target Start/End: Original strand, 19100736 - 19101001
Alignment:
Q  147 atttaagtgtttacccctctactaatattcctcgtagcgtcatccatattatctttcacttcctatttccaattcatcttgacattcttaatttctcata 246  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  19100736 atttaagtgtttacctctctactaatattcctcgtagggtcatccatactatctttcacttcctatttccaagtcatcttgacattcataatttctcata 19100835  T
Q  247 gactattatcttcggttcatatttaagcttgttattatcctaaaatgatcacttctacttatgctcgaacaccctctctcatctatatatgtaatttagg 346  Q
    | |||||||||| |||||||||||||| ||||||||||| | |  | || |||||||||||| ||| ||||| ||| |||||||||| ||||||||||||    
T  19100836 ggctattatctttggttcatatttaagtttgttattatcttgaggtaataacttctacttatactcaaacacactccctcatctataaatgtaatttagg 19100935  T
Q  347 ggtccttacatttaattgacacactaatatatttctgaaaatcactactaattttataaatgttga 412  Q
    |||| |||||||||||| |||||| |||  |||||| ||||||||| ||| ||||||| |||||||    
T  19100936 ggtcgttacatttaatttacacaccaatggatttcttaaaatcacttctacttttatagatgttga 19101001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 140 - 412
Target Start/End: Complemental strand, 15959557 - 15959288
Alignment:
Q  140 cattctaatttaagtgtttacccctctactaatattcctcgtagcgtcatccatattatctttcacttcctatttccaattcatcttgacattcttaatt 239  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||| ||| ||||   |||||||||||||||  |||   |||||||||||||||  |    
T  15959557 cattctaatttaagtgtttacctctctactaatattccttgtagcgttatcaatat---ctttcacttcctattgtcaagctatcttgacattcttagat 15959461  T
Q  240 tctcatagactattatcttcggttcatatttaagcttgttattatcctaaaatgatcacttctacttatgctcgaacaccctctctcatctatatatgta 339  Q
    ||| |||| ||| ||||||| ||||||||||||||||||||||||| | |  | |||||||||| |||||||||||||| ||||||||||||||||| ||    
T  15959460 tcttataggctactatcttcagttcatatttaagcttgttattatcatgaggtaatcacttctatttatgctcgaacacactctctcatctatatattta 15959361  T
Q  340 atttaggggtccttacatttaattgacacactaatatatttctgaaaatcactactaattttataaatgttga 412  Q
    |||||| |||||||| ||||| || ||||||||||  |||||| |||||||||| || ||| ||| |||||||    
T  15959360 atttagaggtccttaaatttactttacacactaatggatttcttaaaatcactattactttaatagatgttga 15959288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 17792140 - 17792272
Alignment:
Q  17 cagtaacctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacatttt-gaatctactctcgtcatt 115  Q
    |||||||| ||||||||||||||| ||||||||| ||||| |||||||||||||| | |||||||||||||| |||||||| ||||||||| ||||||||    
T  17792140 cagtaacccctcatcattaaacaatatcttacacgagcatgtgcacacatcacatccctttgttattcattattacattttggaatctactttcgtcatt 17792239  T
Q  116 cgttctctccatcactacatctttcattctaat 148  Q
    |||||||||| | | ||| ||||||||||||||    
T  17792240 cgttctctccgttagtacctctttcattctaat 17792272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 19100580 - 19100712
Alignment:
Q  17 cagtaacctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacatttt-gaatctactctcgtcatt 115  Q
    |||||||| ||||||||||||||| ||||||||| ||||| |||||||||||||| | |||||||||||||| |||||||| ||||||||| ||||||||    
T  19100580 cagtaacccctcatcattaaacaatatcttacacgagcatgtgcacacatcacatccctttgttattcattattacattttggaatctactttcgtcatt 19100679  T
Q  116 cgttctctccatcactacatctttcattctaat 148  Q
    |||||||||| | | ||| ||||||||||||||    
T  19100680 cgttctctccgttagtacctctttcattctaat 19100712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 14480476 - 14480353
Alignment:
Q  17 cagtaacctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacattttgaatctactctcgtcattc 116  Q
    |||||||| |||||||||||| |||||||||||  || ||||| | ||||||||||| ||||||||||||||||||||||  ||| ||||||||||||||    
T  14480476 cagtaacccctcatcattaaataacatcttacatgagaatatgtatacatcacattcctttgttattcattactacatttgtaatatactctcgtcattc 14480377  T
Q  117 gttctctccatcactacatctttc 140  Q
    ||||||||||| ||||| ||||||    
T  14480376 gttctctccattactacttctttc 14480353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 15959700 - 15959582
Alignment:
Q  21 aacctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacatttt-gaatctactctcgtcattcgtt 119  Q
    |||||||||||||||||||||   |||||| |||||||||||||||||||||| ||||||| | |||||| |||||| |||||||||||||| |||||||    
T  15959700 aacctctcatcattaaacaac---ttacacgagcatatgcacacatcacattcctttgttaattattactgcattttggaatctactctcgttattcgtt 15959604  T
Q  120 ctc-tccatcactacatctttc 140  Q
    ||| |||||  |||||||||||    
T  15959603 ctcatccattgctacatctttc 15959582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 14053919 - 14053795
Alignment:
Q  25 tctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacatttt-gaatctactctcgtcattcgttctct 123  Q
    ||||| |||||| ||||||||||||  |||||||| |||||||| |||| || |||  |||||||| |||||| ||||||||||||||||||| ||||||    
T  14053919 tctcaccattaatcaacatcttacatgagcatatgtacacatcatattccttcgttgctcattactgcattttagaatctactctcgtcattcattctct 14053820  T
Q  124 ccatcactacatctttcattctaat 148  Q
    |||| ||||| |||||||| |||||    
T  14053819 ccattactacgtctttcatcctaat 14053795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 14061728 - 14061620
Alignment:
Q  25 tctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacatttt-gaatctactctcgtcattcgttctct 123  Q
    ||||| ||||||  || |||||| || |||||||| |||||||| |||| || |||  |||||||| |||||| |||||||||||||| |||||||||||    
T  14061728 tctcaccattaattaaaatcttatacgagcatatgtacacatcaaattccttcgttgctcattactgcattttagaatctactctcgttattcgttctct 14061629  T
Q  124 ccatcacta 132  Q
    |||| ||||    
T  14061628 ccattacta 14061620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 311
Target Start/End: Complemental strand, 14058535 - 14058419
Alignment:
Q  195 ttatctttcacttcctatttccaattcatcttgacattcttaatttctcatagactattatcttcggttcatatttaagcttgttattatcctaaaatga 294  Q
    ||||||||||||| |||||| |||  ||||||||||   |||  |||||||||  || |||| ||  ||| ||||| |||||||||||||| |||  | |    
T  14058535 ttatctttcactttctattttcaagccatcttgacaccattagattctcataggttactatcctcaattcctatttcagcttgttattatcttaagttaa 14058436  T
Q  295 tcacttctacttatgct 311  Q
    ||||||||| |||||||    
T  14058435 tcacttctaattatgct 14058419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 141 - 372
Target Start/End: Original strand, 2452 - 2683
Alignment:
Q  141 attctaatttaagtgtttacccctctactaatattcctcgtagcgtcatccatattatctttcacttcctatttccaattcatcttgacattcttaattt 240  Q
    ||||||||||| |||||||||  |||||||||||||||||||| ||| ||||||| |||||||||||||||||||||| ||||||||||||| |||||||    
T  2452 attctaatttaggtgtttacctttctactaatattcctcgtagtgtcctccatatcatctttcacttcctatttccaagtcatcttgacattattaattt 2551  T
Q  241 ctcatagactattatcttcggttcatatttaagcttgttattatcctaaaatgatcacttctacttatgctcgaacaccctctctcatctatatatgtaa 340  Q
    ||||||| |||||||||| |||||||||||||||||||||||||| | |  | ||||||||||| ||||||||||||| ||| ||||||| |||||||||    
T  2552 ctcataggctattatctttggttcatatttaagcttgttattatcttgaggtaatcacttctacctatgctcgaacacactccctcatctctatatgtaa 2651  T
Q  341 tttaggggtccttacatttaattgacacacta 372  Q
    ||||| |||| ||||||||| || ||||||||    
T  2652 tttagaggtcattacatttactttacacacta 2683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 2304 - 2434
Alignment:
Q  18 agtaacctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacattttgaatctactctcgtcattcg 117  Q
    |||||||||||||||||||||||||| |||||| | |||| | ||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||     
T  2304 agtaacctctcatcattaaacaacatattacacgaacataagtacacatcacattcctttgttattcattactaaatttagaatctactctcgtcattca 2403  T
Q  118 ttctctccatcactacatctttcattctaat 148  Q
    |||||||||| ||||| ||||||||||||||    
T  2404 ttctctccattactacctctttcattctaat 2434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0708 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: scaffold0708
Description:

Target: scaffold0708; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 141 - 353
Target Start/End: Original strand, 837 - 1049
Alignment:
Q  141 attctaatttaagtgtttacccctctactaatattcctcgtagcgtcatccatattatctttcacttcctatttccaattcatcttgacattcttaattt 240  Q
    ||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||| || ||||||||||||||| |||||||||||||||||  ||    
T  837 attctaatttaagtgtttacctctctactaatattcctcgtagtatcatccatattatccttaacttcctatttccaagtcatcttgacattcttagatt 936  T
Q  241 ctcatagactattatcttcggttcatatttaagcttgttattatcctaaaatgatcacttctacttatgctcgaacaccctctctcatctatatatgtaa 340  Q
    | ||||| |||||||||| ||||||||||||||||||||| || ||| |  | ||||||||||||||||||||||||| ||| |||||||||||||||||    
T  937 cgcataggctattatctttggttcatatttaagcttgttactaccctgaggtcatcacttctacttatgctcgaacacactccctcatctatatatgtaa 1036  T
Q  341 tttaggggtcctt 353  Q
    |||||||||||||    
T  1037 tttaggggtcctt 1049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0708; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 694 - 819
Alignment:
Q  24 ctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacatttt-gaatctactctcgtcattcgttctc 122  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||| |||| |||||| ||| ||| |||||    
T  694 ctctcatcattaaacaacatcttacacgagcatatgtacacatcacattcctttgttattcattactacattttggaatttactcttgtctttcattctc 793  T
Q  123 tccatcactacatctttcattctaat 148  Q
    ||||| |||||| |||||||||||||    
T  794 tccattactacacctttcattctaat 819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 24830871 - 24830748
Alignment:
Q  17 cagtaacctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacattttgaatctactctcgtcattc 116  Q
    |||||||| ||||||||||||||||||||||||  |||||||| | ||||||||||| ||||||||||||||||||||||  |||| |||||||||| ||    
T  24830871 cagtaacccctcatcattaaacaacatcttacatgagcatatgtatacatcacattcctttgttattcattactacatttgtaatccactctcgtcaatc 24830772  T
Q  117 gttctctccatcactacatctttc 140  Q
    ||||||||||| ||||| ||||||    
T  24830771 gttctctccattactacttctttc 24830748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 14137136 - 14137177
Alignment:
Q  99 aatctactctcgtcattcgttctctccatcactacatctttc 140  Q
    ||||||||||||||||| ||||||| ||| ||||||||||||    
T  14137136 aatctactctcgtcatttgttctcttcattactacatctttc 14137177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 7681456 - 7681333
Alignment:
Q  17 cagtaacctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacattttgaatctactctcgtcattc 116  Q
    |||||||| ||||||||||||||||||||||||  |||||||| | |||| |||||| ||||||||||||||||||||||  |||||||||| |||| ||    
T  7681456 cagtaacccctcatcattaaacaacatcttacatgagcatatgtatacattacattcctttgttattcattactacatttgtaatctactcttgtcaatc 7681357  T
Q  117 gttctctccatcactacatctttc 140  Q
     |||||||||| ||||| ||||||    
T  7681356 attctctccattactacttctttc 7681333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 26792 - 26669
Alignment:
Q  20 taacctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacatttt-gaatctactctcgtcattcgt 118  Q
    |||| ||||| |||||| |||||||||| || |||||||| |||||||| |||| || |||| || ||||| |||||| |||||||||||||||||||||    
T  26792 taacttctcaccattaatcaacatcttatacgagcatatgtacacatcatattccttcgttactcgttactgcattttagaatctactctcgtcattcgt 26693  T
Q  119 tctctccatcactacatctttcat 142  Q
    ||||||||| ||||| ||||||||    
T  26692 tctctccattactacgtctttcat 26669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 17734 - 17611
Alignment:
Q  20 taacctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacatttt-gaatctactctcgtcattcgt 118  Q
    |||| ||||| |||||| |||||| ||| || | |||||| |||||||| |||| ||||||| || ||||| |||||| |||||||||||||||||||||    
T  17734 taacttctcaccattaatcaacattttatacgatcatatgtacacatcatattcctttgttactcgttactgcattttagaatctactctcgtcattcgt 17635  T
Q  119 tctctccatcactacatctttcat 142  Q
    ||||||||| ||||| ||||||||    
T  17634 tctctccattactacgtctttcat 17611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 140 - 284
Target Start/End: Complemental strand, 17588 - 17443
Alignment:
Q  140 cattctaatttaagtgtttacccctctactaatattcctcgtagcgtcatccatatt-atctttcacttcctatttccaattcatcttgacattcttaat 238  Q
    ||||||||||||||| || ||| ||| | ||||||||||| |||||||  || |||| ||||||||||| |||||| |||  |||||||||||  |||      
T  17588 cattctaatttaagtattaacctctcgattaatattcctcatagcgtctcccgtatttatctttcactttctattttcaagccatcttgacatcattaga 17489  T
Q  239 ttctcatagactattatcttcggttcatatttaagcttgttattat 284  Q
    |||||||||  || |||| ||||||| |||||||||||||||||||    
T  17488 ttctcataggttactatcctcggttcctatttaagcttgttattat 17443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 140 - 284
Target Start/End: Complemental strand, 26646 - 26501
Alignment:
Q  140 cattctaatttaagtgtttacccctctactaatattcctcgtagcgtcatccatatt-atctttcacttcctatttccaattcatcttgacattcttaat 238  Q
    ||||||||||||||| || ||| ||| | ||||||||||| |||||||  || |||| ||||||||||| |||||| |||  |||||||||||  |||      
T  26646 cattctaatttaagtattaacctctcgattaatattcctcatagcgtctcccgtatttatctttcactttctattttcaagccatcttgacatcattaga 26547  T
Q  239 ttctcatagactattatcttcggttcatatttaagcttgttattat 284  Q
    |||||||||  || |||| ||||||| |||||||||||||||||||    
T  26546 ttctcataggttactatcctcggttcctatttaagcttgttattat 26501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 142
Target Start/End: Original strand, 131743 - 131872
Alignment:
Q  14 catcagtaacctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacatttt-gaatctactctcgtc 112  Q
    ||||| |||| ||||| |||||| |||||||||| || |||||||| |||||||| |||| || |||| || ||||| |||||| ||||||||| |||||    
T  131743 catcaataacttctcaccattaatcaacatcttatacgagcatatgtacacatcatattccttcgttactcgttactgcattttagaatctactatcgtc 131842  T
Q  113 attcgttctctccatcactacatctttcat 142  Q
    ||||||||||||||| ||||| ||||||||    
T  131843 attcgttctctccattactacgtctttcat 131872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 1224 - 1348
Alignment:
Q  25 tctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacatttt-gaatctactctcgtcattcgttctct 123  Q
    ||||| |||||| |||||||||| || |||||||| |||||||| |||| || |||| |||||||| |||||| ||||||||||||||||||||||||||    
T  1224 tctcaccattaatcaacatcttatacgagcatatgtacacatcatattccttcgttactcattactgcattttagaatctactctcgtcattcgttctct 1323  T
Q  124 ccatcactacatctttcattctaat 148  Q
      || ||||| |||||||| |||||    
T  1324 ttattactacgtctttcatcctaat 1348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 286
Target Start/End: Original strand, 1394 - 1512
Alignment:
Q  169 taatattcctcgtagcgtcatccatatt-atctttcacttcctatttccaattcatcttgacattcttaatttctcatagactattatcttcggttcata 267  Q
    ||||||||||  |||||||  ||||||| ||||||||||| |||||| |||  ||||||||||   |||  |||||||||  || |||| ||| ||| ||    
T  1394 taatattccttatagcgtctcccatatttatctttcactttctattttcaagccatcttgacaccattagattctcataggttactatcctcgattctta 1493  T
Q  268 tttaagcttgttattatcc 286  Q
    |||||||||||||||||||    
T  1494 tttaagcttgttattatcc 1512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 10388882 - 10389014
Alignment:
Q  17 cagtaacctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacatttt-gaatctactctcgtcatt 115  Q
    ||||||| ||||||||||||  |||||||||  | |||||||  ||||||||||||| || ||||||||||||| |||||| ||||||||  ||||||||    
T  10388882 cagtaacttctcatcattaattaacatcttatgcgagcatatttacacatcacattccttcgttattcattactgcattttggaatctaccatcgtcatt 10388981  T
Q  116 cgttctctccatcactacatctttcattctaat 148  Q
    |||||| |||||  ||||||||||||| |||||    
T  10388982 cgttctttccatttctacatctttcatcctaat 10389014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 299 - 410
Target Start/End: Complemental strand, 24853776 - 24853665
Alignment:
Q  299 ttctacttatgctcgaacaccctctctcatctatatatgtaatttaggggtccttacatttaattgacacactaatatatttctgaaaatcactactaat 398  Q
    ||||| |||||||| | ||| ||| |||||||||||||||| ||||||| |||||||||||| |  ||||||||||   ||||| |||||||||| || |    
T  24853776 ttctatttatgctcaaccacactccctcatctatatatgtagtttagggatccttacatttactctacacactaatgactttcttaaaatcactattact 24853677  T
Q  399 tttataaatgtt 410  Q
    |||||| |||||    
T  24853676 tttatagatgtt 24853665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 412
Target Start/End: Complemental strand, 24853609 - 24853495
Alignment:
Q  298 cttctacttatgctcgaacaccctctctcatctatatatgtaatttaggggtccttacatttaattgacacactaatatatttctgaaaatcactactaa 397  Q
    |||||| |||||||| ||||| ||| |||||||||||||||| ||||||| |||||||||||  |  ||||||||||   ||||| |||||||||| ||     
T  24853609 cttctatttatgctcaaacacactccctcatctatatatgtagtttagggatccttacatttgttctacacactaatgactttcttaaaatcactattat 24853510  T
Q  398 ttttataaatgttga 412  Q
     |||||| |||||||    
T  24853509 ctttatagatgttga 24853495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 287
Target Start/End: Complemental strand, 51625802 - 51625656
Alignment:
Q  142 ttctaatttaagtgtttacccctctactaatattcctcgtagcgtcatccatatt-atctttcacttcctatttccaattcatcttgacattcttaattt 240  Q
    ||||||||||||| || ||| ||| | |||||||||||  ||||||  ||||||| || |||||||| | |||| |||  ||||||||||   |||  ||    
T  51625802 ttctaatttaagtattaacctctcgattaatattcctcacagcgtctcccatatttatatttcactttcaattttcaagccatcttgacaccattaggtt 51625703  T
Q  241 ctcatagactattatcttcggttcatatttaagcttgttattatcct 287  Q
    |||||||  || |||| ||||||| |||||||||||||||| |||||    
T  51625702 ctcataggttactatcctcggttcctatttaagcttgttatcatcct 51625656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 51625867 - 51625827
Alignment:
Q  102 ctactctcgtcattcgttctctccatcactacatctttcat 142  Q
    ||||||| |||||||||||||||||| ||||| ||||||||    
T  51625867 ctactctagtcattcgttctctccattactacgtctttcat 51625827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 27139 - 27016
Alignment:
Q  20 taacctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacatttt-gaatctactctcgtcattcgt 118  Q
    |||| ||||| |||||| |||||| ||| || | |||||| |||||||| |||| ||||||| || ||||| |||||| |||||||||||||||||||||    
T  27139 taacttctcaccattaatcaacattttatacgaccatatgtacacatcatattcctttgttactcgttactgcattttagaatctactctcgtcattcgt 27040  T
Q  119 tctctccatcactacatctttcat 142  Q
    ||||||||| ||||| ||||||||    
T  27039 tctctccattactacgtctttcat 27016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 140 - 284
Target Start/End: Complemental strand, 26993 - 26848
Alignment:
Q  140 cattctaatttaagtgtttacccctctactaatattcctcgtagcgtcatccatatt-atctttcacttcctatttccaattcatcttgacattcttaat 238  Q
    ||||||||||||||| || ||| ||| | ||||||||||| |||||||  || |||| ||||||||||| |||||| |||| |||||||||||  |||      
T  26993 cattctaatttaagtattaacctctcgattaatattcctcatagcgtctcccgtatttatctttcactttctattttcaatccatcttgacatcattaga 26894  T
Q  239 ttctcatagactattatcttcggttcatatttaagcttgttattat 284  Q
    |||||||||  || |||| ||||||| |||||||||||||||||||    
T  26893 ttctcataggttactatcctcggttcctatttaagcttgttattat 26848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 15626 - 15743
Alignment:
Q  25 tctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacatttt-gaatctactctcgtcattcgttctct 123  Q
    ||||| |||||| |||||||||| ||  ||||||| |||||||| |||| || |||| |||||||| |||||| ||||||||||||||||||||||||||    
T  15626 tctcagcattaatcaacatcttatacgggcatatgtacacatcatattccttcgttactcattactgcattttagaatctactctcgtcattcgttctct 15725  T
Q  124 ccatcactacatctttca 141  Q
    |||| || || |||||||    
T  15726 ccattaccacgtctttca 15743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 29295118 - 29295248
Alignment:
Q  20 taacctctcatcattaaacaacatcttacacaagcatat--gcacacatcacattcttttgttattcattactacatttt-gaatctactctcgtcattc 116  Q
    |||| |||||||||||| ||||||||||  |||||||||  | ||||||||||||   | ||| ||||||||| |||||| |||||||||| ||||||||    
T  29295118 taacttctcatcattaatcaacatcttatgcaagcatatatgtacacatcacatttcctcgttgttcattactgcattttagaatctactc-cgtcattc 29295216  T
Q  117 gttctctccatcactacatctttcattctaat 148  Q
    ||||||||||| |||||||||||||| |||||    
T  29295217 gttctctccattactacatctttcatcctaat 29295248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 145 - 308
Target Start/End: Original strand, 29295270 - 29295433
Alignment:
Q  145 taatttaagtgtttacccctctactaatattcctcgtagcgtcatccatattatctttcacttcctatttccaattcatcttgacattcttaatttctca 244  Q
    |||| ||||| |||||| ||||| ||||||||||| || | || |||||||||||| |||||| ||||  ||||  || ||||||||  |||  ||||||    
T  29295270 taatataagtctttacctctctattaatattcctcataacttcctccatattatctatcactttctatgaccaagccaccttgacatcattagattctca 29295369  T
Q  245 tagactattatcttcggttcatatttaagcttgttattatcctaaaatgatcacttctacttat 308  Q
     || ||| ||||||  |||||||||||||||| ||||||| ||   ||||||||||||| ||||    
T  29295370 caggctactatcttaagttcatatttaagcttattattattctgggatgatcacttctatttat 29295433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 30303 - 30426
Alignment:
Q  20 taacctctcatcattaaacaacatcttacacaagcatatgcacacatcacattcttttgttattcattactacatttt-gaatctactctcgtcattcgt 118  Q
    |||| ||||| |||||| |||||||||| || |||||||| |||||||| |||| ||  ||| |||||||| |||||| ||||||||||||||||||| |    
T  30303 taacttctcaccattaatcaacatcttatacgagcatatgtacacatcatattccttcattactcattactgcattttagaatctactctcgtcattcat 30402  T
Q  119 tctctccatcactacatctttcat 142  Q
    ||||| ||| ||||| ||||||||    
T  30403 tctcttcattactacgtctttcat 30426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 140 - 284
Target Start/End: Original strand, 30449 - 30594
Alignment:
Q  140 cattctaatttaagtgtttacccctctactaatattcctcgtagcgtcatccata-ttatctttcacttcctatttccaattcatcttgacattcttaat 238  Q
    ||||||||||||||| || ||| ||| | ||||||||||| || ||||  |  || ||||||||||||| |||||| |||  ||||||||||   |||      
T  30449 cattctaatttaagtattaacctctcgattaatattcctcataacgtctcctgtatttatctttcactttctattttcaagccatcttgacaccattaga 30548  T
Q  239 ttctcatagactattatcttcggttcatatttaagcttgttattat 284  Q
    |||||||||  || |||| ||||||| |||||||||||||||||||    
T  30549 ttctcataggttactatcctcggttcctatttaagcttgttattat 30594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 1028 - 1089
Alignment:
Q  141 attctaatttaagtgtttacccctctactaatattcctcgtagcgtcatccatattatcttt 202  Q
    ||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||    
T  1028 attctaatttaagtgcttacctctctactaatattcctcgtagcatcatccatattatcttt 1089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 941 - 1007
Alignment:
Q  80 tattcattactacattttg-aatctactctcgtcattcgttctctccatcactacatctttcattct 145  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| ||||||||||    
T  941 tattcattactacattttggaatctactctcgtctttcgttctctccattactacacctttcattct 1007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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