View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4806_high_12 (Length: 419)

Name: NF4806_high_12
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4806_high_12
NF4806_high_12
[»] chr3 (6 HSPs)
chr3 (99-351)||(23203353-23203614)
chr3 (12-127)||(23202766-23202877)
chr3 (12-80)||(9488728-9488796)
chr3 (362-405)||(23203898-23203941)
chr3 (41-97)||(13860394-13860450)
chr3 (190-233)||(13860582-13860625)
[»] chr4 (2 HSPs)
chr4 (104-339)||(7687225-7687465)
chr4 (23-100)||(7686031-7686108)
[»] scaffold0517 (1 HSPs)
scaffold0517 (373-405)||(5817-5849)
[»] chr6 (2 HSPs)
chr6 (23-83)||(9818727-9818787)
chr6 (12-71)||(4966818-4966877)
[»] chr1 (1 HSPs)
chr1 (373-405)||(37402227-37402259)


Alignment Details
Target: chr3 (Bit Score: 89; Significance: 9e-43; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 99 - 351
Target Start/End: Original strand, 23203353 - 23203614
Alignment:
Q  99 atatcttgtgataagcataaaagttaaacccaaatatcccatcaacagaatatttataaacactaaaaattatcaa-----tattgaactataagaaagg 193  Q
    ||||||||||||||| ||||||||||||  | |||||||||||| |||||| ||||| ||| ||| ||||||||||     ||||||||||||||||| |    
T  23203353 atatcttgtgataaggataaaagttaaaagccaatatcccatcagcagaatttttatgaactctagaaattatcaaataaatattgaactataagaaaag 23203452  T
Q  194 aagaaacaaggacttcgtcttaaacaattcaggtttaagtgcatcaaccct----ttaaacatcctatacacatcaacatgttatcattttatactgaat 289  Q
    ||||||||  |||| | ||||||||||||||| ||||||||||||| ||||    ||||||||| |||||| ||||| ||||||  ||||||||   ||     
T  23203453 aagaaacatagactccctcttaaacaattcagatttaagtgcatcagccctcaaattaaacatcttatacatatcaatatgttactattttatatctaac 23203552  T
Q  290 ctgaatgttatggtattaatatctatacaatcattgaaaactatggcatttcctgtgaatgt 351  Q
    ||||| |||||  ||||| ||||||||||||||| |||||||| || | | |||||||||||    
T  23203553 ctgaacgttatcatattattatctatacaatcatagaaaactacggaactgcctgtgaatgt 23203614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 23202766 - 23202877
Alignment:
Q  12 atcatcttcaatattcccaaaagttgcaccaaagggctcgttcacaacctacaattaaaataaattcaaatgcaatattaagaaattatatcttgtgata 111  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    |||||||    
T  23202766 atcatcttcagtattgccaaaagttgcaccaaagggctcgttcacaacctacaattaaaataaattcaaatgcaatattaataaattgt----tgtgata 23202861  T
Q  112 agcataaaagttaaac 127  Q
    |||||| ||| |||||    
T  23202862 agcatagaagataaac 23202877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 9488796 - 9488728
Alignment:
Q  12 atcatcttcaatattcccaaaagttgcaccaaagggctcgttcacaacctacaattaaaataaattcaa 80  Q
    ||||||| ||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9488796 atcatctgcaacattgccaaaagttgcaccaaagggctccttcacaacctacaattaaaataaattcaa 9488728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 362 - 405
Target Start/End: Original strand, 23203898 - 23203941
Alignment:
Q  362 attccagtaaggtgctcttgatccatgatattcaatgttccatc 405  Q
    |||| ||||||||||| |||||||||||||||||||||||||||    
T  23203898 attctagtaaggtgcttttgatccatgatattcaatgttccatc 23203941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 13860394 - 13860450
Alignment:
Q  41 caaagggctcgttcacaacctacaattaaaataaattcaaatgcaatattaagaaat 97  Q
    |||||||||  |||||||||||||||||||||| ||| ||| |||||||||| ||||    
T  13860394 caaagggcttcttcacaacctacaattaaaatacattgaaaagcaatattaataaat 13860450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 13860582 - 13860625
Alignment:
Q  190 aaggaagaaacaaggacttcgtcttaaacaattcaggtttaagt 233  Q
    |||||||||||| ||||| | |||||||||||||||||||||||    
T  13860582 aaggaagaaacatggactccctcttaaacaattcaggtttaagt 13860625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 104 - 339
Target Start/End: Original strand, 7687225 - 7687465
Alignment:
Q  104 ttgtgataagcataaaagttaaacccaaatatcccatcaacagaatatttataaacactaaaaattatcaatattgaactataagaaaggaagaaacaag 203  Q
    ||||||||||||||||| |||||||  ||||| ||||||||| ||  ||||  ||| ||| |||||||||||||||||||||||| |||| |||||||      
T  7687225 ttgtgataagcataaaatttaaaccacaatattccatcaacataac-tttaagaactctataaattatcaatattgaactataaggaaggtagaaacata 7687323  T
Q  204 gacttcgtcttaaacaattcaggtttaagtgcatcaaccct----ttaa--acatcctatacacatcaacatgttatcattttatactgaatctgaatgt 297  Q
    ||||   ||||||||||||||||||||||| ||| ||||||    ||||  |||||||||||||||||   ||||| ||||||||| | ||  |||||||    
T  7687324 gactgtctcttaaacaattcaggtttaagtccataaaccctcaaattaaacacatcctatacacatcattttgttaccattttatatttaacttgaatgt 7687423  T
Q  298 tatggtattaatatctatacaatcattgaaaactatggcatt 339  Q
    |||  ||||| |||||||||| |||| ||||| | |||||||    
T  7687424 tatcatattactatctatacagtcatagaaaaatgtggcatt 7687465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 7686031 - 7686108
Alignment:
Q  23 tattcccaaaagttgcaccaaagggctcgttcacaacctacaattaaaataaattcaaatgcaatattaagaaattat 100  Q
    |||| ||||||||||||||||||||||| ||||| | ||||||| |||||||||||||||||||||||||||||||||    
T  7686031 tatttccaaaagttgcaccaaagggctccttcacgatctacaatcaaaataaattcaaatgcaatattaagaaattat 7686108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 373 - 405
Target Start/End: Original strand, 5817 - 5849
Alignment:
Q  373 gtgctcttgatccatgatattcaatgttccatc 405  Q
    |||||||||||||||||||||||||||||||||    
T  5817 gtgctcttgatccatgatattcaatgttccatc 5849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 9818727 - 9818787
Alignment:
Q  23 tattcccaaaagttgcaccaaagggctcgttcacaacctacaattaaaataaattcaaatg 83  Q
    |||| |||||||||||| |||||||||| |||||||||| |||||| || ||| |||||||    
T  9818727 tattaccaaaagttgcatcaaagggctccttcacaacctgcaattagaaaaaactcaaatg 9818787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 4966818 - 4966877
Alignment:
Q  12 atcatcttcaatattcccaaaagttgcaccaaagggctcgttcacaacctacaattaaaa 71  Q
    ||||||| || |||| |||||||||||| |||| ||||| |||||||||| |||||||||    
T  4966818 atcatctgcagtattgccaaaagttgcaacaaatggctccttcacaacctgcaattaaaa 4966877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 373 - 405
Target Start/End: Complemental strand, 37402259 - 37402227
Alignment:
Q  373 gtgctcttgatccatgatattcaatgttccatc 405  Q
    |||||||||||||||||||||||||||||||||    
T  37402259 gtgctcttgatccatgatattcaatgttccatc 37402227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University