View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4806_high_14 (Length: 389)
Name: NF4806_high_14
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 6e-93; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 195 - 371
Target Start/End: Complemental strand, 54435967 - 54435791
Alignment:
| Q |
195 |
acgtataccaaaatttttacattataggaacacaatttttcaacgaatgcgacaactaaaatgtaacggtgagagtatctgaaattattgtcttaaaaat |
294 |
Q |
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| T |
54435967 |
acgtataccaaaatttttacattataggaacacaatttttcaacgaatgcgacaactaaaatgtaacggtgagagtatctgaaattattgtcttaaaaat |
54435868 |
T |
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| Q |
295 |
atataattaatgattgttttaaacagaagaatttttggggtacaaattaactttaagattttttaagaggggcattt |
371 |
Q |
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| T |
54435867 |
atataattaatgattattttaaacagaagaatttttggggtacaaattaactttaagattttttaagaggggcattt |
54435791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 54436071 - 54436005
Alignment:
| Q |
91 |
aactcgacctctctttattgaaaaactcttatttattgttatttcaacctatcttataaattaatcc |
157 |
Q |
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| T |
54436071 |
aactcgacctctctttattgaaaaactcttatttattgttatttcaacctatcttataaattaatcc |
54436005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 54436114 - 54436071
Alignment:
| Q |
31 |
tttttaactatgtggtctagtcctatttcatcatgctgtgagca |
74 |
Q |
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| T |
54436114 |
tttttaactacgtggtctagtcctatttcatcatactgggagca |
54436071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 54437566 - 54437527
Alignment:
| Q |
1 |
aaaccagatgaaaacggatgtaattacccttttttaacta |
40 |
Q |
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| T |
54437566 |
aaaccaaatgaagacggatgtaattacccttttttaacta |
54437527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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