View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4806_high_15 (Length: 385)
Name: NF4806_high_15
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 5e-78; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 175 - 375
Target Start/End: Original strand, 8039256 - 8039467
Alignment:
| Q |
175 |
ggttgtatttttattacttgcatgtctattttt-------taaaaaacctaaactagttcatcgaaattgttgcttctctatctgttggttgagaaaaga |
267 |
Q |
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| T |
8039256 |
ggttgtatttttattacttgcatgtctatttttattttttttaagaacctaaactagttcatcgaaattgttgcttctctatttgttggttgagaaaaga |
8039355 |
T |
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| Q |
268 |
tgcttgattgagaataaccgagagttctaaaacata---ttctcttgaaaacttt-gtgctccaatctctcaaatttcttgatgcaaattttaacctagt |
363 |
Q |
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| T |
8039356 |
tgcttgattgagaataactgagagttctaaaacatattcttctcttgaaaactttggtgctccaatctctcaaatttcttgatgcaaattttaacctagt |
8039455 |
T |
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| Q |
364 |
agtttttctgtg |
375 |
Q |
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| T |
8039456 |
agtttttctgtg |
8039467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 176 - 339
Target Start/End: Original strand, 8027162 - 8027331
Alignment:
| Q |
176 |
gttgtatttttattacttgcatgtctat-------tttttaaaaaacctaaactagttcatcgaaattgttgcttctctatctgttggttgagaaaagat |
268 |
Q |
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| T |
8027162 |
gttgtatttttattacttgcatatctatattttttttttttaagaacctaaattaatccatcgaaattgttgctcgtctatttgttggttgagaaaagat |
8027261 |
T |
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| Q |
269 |
gcttgattgagaataaccgagagttctaaaacatattctcttgaaaacttt-gtgctccaatctctcaaatt |
339 |
Q |
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| T |
8027262 |
gcttgattgagaataactaagagttctaaaacatat--tcttgaaaactttggtgcttcaatctctcaaatt |
8027331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 8039086 - 8039168
Alignment:
| Q |
5 |
tttctaatcaaaaaccaacattacattaagattccactgtcattcacatcaataataactccaacatattcacatttgaacca |
87 |
Q |
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| T |
8039086 |
tttctaatcaaaaaccaactttgcatttagattccactgtcattctcatcaataataactcctacatattcacatttgaacca |
8039168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 245 - 353
Target Start/End: Original strand, 49592236 - 49592344
Alignment:
| Q |
245 |
tctatctgttggttgagaaaagatgcttgattgagaataaccgagagttctaaaacatattctcttgaaaactttg-tgctccaatctctcaaatttctt |
343 |
Q |
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||||| ||||||||||||||||||| |||| | ||||| ||||||| |||| |||||||| |||||||||||| |||| |||| |||||||||||| |
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| T |
49592236 |
tctatttgttggttgagaaaagatgattgacttagaatggtagagagttttaaagcatattct-ttgaaaactttggtgctaaaatccctcaaatttctt |
49592334 |
T |
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| Q |
344 |
gatgcaaatt |
353 |
Q |
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| T |
49592335 |
gatgcaaatt |
49592344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 353
Target Start/End: Complemental strand, 7235809 - 7235701
Alignment:
| Q |
245 |
tctatctgttggttgagaaaagatgcttgattgagaataaccgagagttctaaaacatattctcttgaaaactttg-tgctccaatctctcaaatttctt |
343 |
Q |
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||||| ||||||||||||||||||| |||| | | ||| ||||||| |||| |||||||| |||||||||||| |||| |||| |||||||||||| |
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| T |
7235809 |
tctatttgttggttgagaaaagatgattgacttaaaatggttgagagttttaaagcatattct-ttgaaaactttggtgctaaaatccctcaaatttctt |
7235711 |
T |
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| Q |
344 |
gatgcaaatt |
353 |
Q |
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| T |
7235710 |
gatgcaaatt |
7235701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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