View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4806_high_18 (Length: 342)
Name: NF4806_high_18
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806_high_18 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 33618822 - 33619151
Alignment:
| Q |
1 |
tttgtctcaaaaatgtgaagattgctgtgtccattgtcctggcagtggtgactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggt |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33618822 |
tttgtctcaacaatgtgaagattgctgtgtccattgtcctggcagtggtgactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggt |
33618921 |
T |
|
| Q |
101 |
attggtgctattgtgtttctactctgcaggttttggttggtcatggggtcctttaacatggcttattccaagtgagattttcccagtaaaaataagaacc |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33618922 |
attggtgctattgtgtttctactctgcaggttttggttggtcatggggtccattaacatggcttattccaagtgagattttcccagtaaaaataagaacc |
33619021 |
T |
|
| Q |
201 |
acaggacaaagcatagctgttgctgtgcaattcataataatctttgtgttatcgcaaacattcttgacaatgttatgccacatgaagttcggggccttcg |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33619022 |
acaggacaaagcatagctgttgctgtgcaattcataataatctttgtgttatcgcaaacattcttgacaatgttatgccacatgaagtttggggccttcg |
33619121 |
T |
|
| Q |
301 |
tcttctatgctttttgggttattgtgatga |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
33619122 |
tcttctatgctttttgggttattgtgatga |
33619151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 330
Target Start/End: Original strand, 33609551 - 33609869
Alignment:
| Q |
12 |
aatgtgaagattgctgtgtccattgtcctggcagtggtgactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctat |
111 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||| |||||||||| |||||||| |||||||||||||| ||||||||| | ||||||||||||| |
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|
| T |
33609551 |
aatgtgaagattgctgtgtccattgtgctagcagtggtgtctggtgttgacggtacaaacgacatatccaaggggaatgcaatattagtattggtgctat |
33609650 |
T |
|
| Q |
112 |
tgtgtttctactctgcaggttttggttggtcatggggtcctttaacatggcttattccaagtgagattttcccagtaaaaataagaaccacaggacaaag |
211 |
Q |
| |
|
| ||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
33609651 |
tatgtttatactctgctggttttggttggtcatggggtcctctaacatggcttattccaagtgagattttcccagtaaatataagaaccacaggacaaag |
33609750 |
T |
|
| Q |
212 |
catagctgttgctgtgcaattcataataatctttgtgttatcgcaaacattcttgacaatgttatgccacatgaagttcggggccttcgtcttctatgct |
311 |
Q |
| |
|
||||||| ||||| | |||||||||||| | |||||| |||| ||||||||||||||||||||||| ||| | ||||| || |||||| | ||||||||| |
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|
| T |
33609751 |
catagctattgctatacaattcataatagtatttgtgctatcacaaacattcttgacaatgttatgtcactttaagtttggagccttcttgttctatgct |
33609850 |
T |
|
| Q |
312 |
ttttgggttattgtgatga |
330 |
Q |
| |
|
||||||| |||||||| |
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|
| T |
33609851 |
ggttgggttgctgtgatga |
33609869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 33628040 - 33628354
Alignment:
| Q |
16 |
tgaagattgctgtgtccattgtcctggcagtggtgactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctattgtg |
115 |
Q |
| |
|
||||| |||| ||||||||||| || |||||||| |||||||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||| |||| |
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|
| T |
33628040 |
tgaagcttgcggtgtccattgtgctagcagtggtaactggtgttgatggtacaaatgacatatcaaagggcaatgcaatattggtattggtactaatgtg |
33628139 |
T |
|
| Q |
116 |
tttctactctgcaggttttggttggtcatggggtcctttaacatggcttattccaagtgagattttcccagtaaaaataagaaccacaggacaaagcata |
215 |
Q |
| |
|
|||||| |||| |||||||||| ||| ||| ||||| |||||||||| ||||||| ||||||||| |||||||| ||||||| ||| |||||||||||| |
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|
| T |
33628140 |
tttctatgctgcgggttttggtttgtcgtggagtcctctaacatggctaattccaactgagatttttccagtaaatataagaagcactggacaaagcata |
33628239 |
T |
|
| Q |
216 |
gctgttgctgtgcaattcataataatctttgtgttatcgcaaacattcttgacaatgttatgccacatgaagttcggggccttcgtcttctatgcttttt |
315 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||| ||||||| ||||| || | ||||||||| || |
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|
| T |
33628240 |
gctgttgctgtgcatttcataatgatatttgtgttatcgcaaacattcttgactatgttatgccacttgaagtttggggcatttttgttctatgctggtt |
33628339 |
T |
|
| Q |
316 |
gggttattgtgatga |
330 |
Q |
| |
|
||||| ||||||||| |
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|
| T |
33628340 |
gggttgttgtgatga |
33628354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 50 - 320
Target Start/End: Original strand, 33596162 - 33596432
Alignment:
| Q |
50 |
gactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctattgtgtttctactctgcaggttttggttggtcatggggt |
149 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||||| ||||||| | |||||||||| || | ||||||||| | ||||||||||||||||| |||||| |
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|
| T |
33596162 |
gactggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggt |
33596261 |
T |
|
| Q |
150 |
cctttaacatggcttattccaagtgagattttcccagtaaaaataagaaccacaggacaaagcatagctgttgctgtgcaattcataataatctttgtgt |
249 |
Q |
| |
|
|| | || ||||| ||||||||||| |||||||| ||||||| ||||| || |||||||| ||||| |||| ||| ||||||||||| | ||||||| |
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|
| T |
33596262 |
ccactcacctggctaattccaagtgaaattttccccttaaaaatcagaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttgtgt |
33596361 |
T |
|
| Q |
250 |
tatcgcaaacattcttgacaatgttatgccacatgaagttcggggccttcgtcttctatgctttttgggtt |
320 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| | ||||| || || ||| | |||||||| ||||||||| |
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| T |
33596362 |
tatcacaaacattcttgacaatgctatgccacttcaagtttggtgctttcttgttctatgcattttgggtt |
33596432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 50 - 320
Target Start/End: Original strand, 33603293 - 33603563
Alignment:
| Q |
50 |
gactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctattgtgtttctactctgcaggttttggttggtcatggggt |
149 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||||| ||||||| | |||||||||| || | ||||||||| | ||||||||||||||||| |||||| |
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|
| T |
33603293 |
gactggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggt |
33603392 |
T |
|
| Q |
150 |
cctttaacatggcttattccaagtgagattttcccagtaaaaataagaaccacaggacaaagcatagctgttgctgtgcaattcataataatctttgtgt |
249 |
Q |
| |
|
|| | || ||||| ||||||||||| |||||||| ||||||| ||||| || |||||||| ||||| |||| ||| ||||||||||| | ||||||| |
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|
| T |
33603393 |
ccactcacctggctaattccaagtgaaattttccccttaaaaatcagaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttgtgt |
33603492 |
T |
|
| Q |
250 |
tatcgcaaacattcttgacaatgttatgccacatgaagttcggggccttcgtcttctatgctttttgggtt |
320 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| | ||||| || || ||| | |||||||| ||||||||| |
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|
| T |
33603493 |
tatcacaaacattcttgacaatgctatgccacttcaagtttggtgctttcttgttctatgcattttgggtt |
33603563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 50 - 320
Target Start/End: Original strand, 33588990 - 33589260
Alignment:
| Q |
50 |
gactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctattgtgtttctactctgcaggttttggttggtcatggggt |
149 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||||| ||||||| | |||||||||| || | ||||||||| | ||||||||||||||||| |||||| |
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|
| T |
33588990 |
gactggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggt |
33589089 |
T |
|
| Q |
150 |
cctttaacatggcttattccaagtgagattttcccagtaaaaataagaaccacaggacaaagcatagctgttgctgtgcaattcataataatctttgtgt |
249 |
Q |
| |
|
|| | || ||||| ||||||||||| |||||||| ||||||| ||||| || |||||||| ||||| |||| ||| ||||||||||| | ||| ||| |
|
|
| T |
33589090 |
ccactcacctggctaattccaagtgaaattttccccttaaaaatcagaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttatgt |
33589189 |
T |
|
| Q |
250 |
tatcgcaaacattcttgacaatgttatgccacatgaagttcggggccttcgtcttctatgctttttgggtt |
320 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| | ||||| || || ||| | |||||||| ||||||||| |
|
|
| T |
33589190 |
tatcacaaacattcttgacaatgctatgccacttcaagtttggtgctttcttgttctatgcattttgggtt |
33589260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 27 - 280
Target Start/End: Original strand, 33623664 - 33623917
Alignment:
| Q |
27 |
gtgtccattgtcctggcagtggtgactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctattgtgtttctactctg |
126 |
Q |
| |
|
|||| |||||| ||| ||||||| ||||||||||||||||||| |||||||| ||||||||||||||| || ||||||| ||| | ||||||| ||| |
|
|
| T |
33623664 |
gtgttcattgtgctgacagtggttcctggtgttgatggtacaaatgacatatcaaagggcaatgcaatattgatattggtactaatatgtttctgtgctg |
33623763 |
T |
|
| Q |
127 |
caggttttggttggtcatggggtcctttaacatggcttattccaagtgagattttcccagtaaaaataagaaccacaggacaaagcatagctgttgctgt |
226 |
Q |
| |
|
| ||||| | || ||| ||| | ||| |||||||||| ||||||| |||||||||||| | | ||| ||| || |||||||||||||||||| ||| |
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|
| T |
33623764 |
cgggtttagatttgtcgtggagccctctaacatggctaattccaactgagattttccccatttatataggaagcattcgacaaagcatagctgttgttgt |
33623863 |
T |
|
| Q |
227 |
gcaattcataataatctttgtgttatcgcaaacattcttgacaatgttatgcca |
280 |
Q |
| |
|
||| |||||||| |||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
33623864 |
gcatttcataatggtctttgtgctatcgcaaacattcttgactatgttatgcca |
33623917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 112 - 288
Target Start/End: Original strand, 33563471 - 33563647
Alignment:
| Q |
112 |
tgtgtttctactctgcaggttttggttggtcatggggtcctttaacatggcttattccaagtgagattttcccagtaaaaataagaaccacaggacaaag |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||| | ||||||||||| ||||| || | ||||| ||||| || |||||||| |
|
|
| T |
33563471 |
tgtgtttctactctgcaggttttggttggtcatggggtcctctattatggataattccaagtgaaatttttcctttgaaaatcagaacaactggacaaag |
33563570 |
T |
|
| Q |
212 |
catagctgttgctgtgcaattcataataatctttgtgttatcgcaaacattcttgacaatgttatgccacatgaagt |
288 |
Q |
| |
|
||||||| || ||||||||||||||| || |||||||| || || |||||||||||||||||||| ||| |||||| |
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|
| T |
33563571 |
catagctatttctgtgcaattcataactatatttgtgttgtctcagacattcttgacaatgttatgtcacttgaagt |
33563647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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