View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4806_high_19 (Length: 340)
Name: NF4806_high_19
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 23 - 322
Target Start/End: Complemental strand, 51990715 - 51990416
Alignment:
| Q |
23 |
agagagaagaaataaagagtgagttacctgaaggtgtcgaaatggtaccagcgaggagaatcaccggtgcgagaagtggtgagcatgaagatagaggaag |
122 |
Q |
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| T |
51990715 |
agagagaagaaataaagagtgagttacctgaaggtgtcgaaatggtaccagcgaggagaatcaccggtgcgagaagtggcgagcatgaagatagaggaag |
51990616 |
T |
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| Q |
123 |
caagggagaatgaaaaagaggtgagacggaagacgaggatgagtgaattgaaacgacggagtttgtgttcagcgacggtggagtggaaacgaggggcgga |
222 |
Q |
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| T |
51990615 |
caagggagaatgaaaaagaggtgagacggaagacgaggatgagtgaattgaaacgacggagtttgtgttcagcgacggtggagtggaaacgaggggcaga |
51990516 |
T |
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| Q |
223 |
aggtgaacggttgttatcggcgacgccgttgtgaagtggctgaggggaacgcatggtggtgagaaataaaaatcatgtggaatggaatggaagaatagag |
322 |
Q |
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| T |
51990515 |
aggtgaacggttgttatcggcgacgccgttgtgaagtggctgaggggaacgcatggtggtgagaaataaaaatcatgtggaatggaatggaagaatagag |
51990416 |
T |
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