View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4806_high_20 (Length: 327)
Name: NF4806_high_20
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 68 - 311
Target Start/End: Complemental strand, 4975695 - 4975452
Alignment:
| Q |
68 |
gtagatgaaagagcaaacactatttaaaaacttgcgcacataaaagggagattttgagtttgaactcggttaactaaaatgttcagttaacaatttcggt |
167 |
Q |
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| T |
4975695 |
gtagatgaaaggacaaacactacttaaaaacttgcacacataaaagggagattttgagtttgaactcgattaactaaaatgttcagtttacaatttcggt |
4975596 |
T |
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| Q |
168 |
attatcaattcagtcggactttatggacaattgtcgagnnnnnnnngaatattgcataaaaatgttatttgaaaaatgtatgtaccttcccttagtttag |
267 |
Q |
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| T |
4975595 |
attatcaattgagtcggattttatggacaattgtcgagaaaaaaaagaatatagcataaaaatgttatttgaaaaatgtatgtaccttcccttagtttag |
4975496 |
T |
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| Q |
268 |
ttatttattcatcctgctcaacaataattgtattgtcttgatct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4975495 |
ttatttattcatcctgctcaacaataattgtattgtcttgatct |
4975452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 68 - 311
Target Start/End: Complemental strand, 4993603 - 4993360
Alignment:
| Q |
68 |
gtagatgaaagagcaaacactatttaaaaacttgcgcacataaaagggagattttgagtttgaactcggttaactaaaatgttcagttaacaatttcggt |
167 |
Q |
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||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
4993603 |
gtagatgaaaggacaaacactacttaaaaacttgcacacataaaagggagattttgagtttgaactcgattaactaaaatgttcagtttacaatttcggt |
4993504 |
T |
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| Q |
168 |
attatcaattcagtcggactttatggacaattgtcgagnnnnnnnngaatattgcataaaaatgttatttgaaaaatgtatgtaccttcccttagtttag |
267 |
Q |
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|||||||||| ||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4993503 |
attatcaattgagtcggattttatggacaattgtcgagaaaaaaaagaatatagcataaaaatgttatttgaaaaatgtatgtaccttcccttagtttag |
4993404 |
T |
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| Q |
268 |
ttatttattcatcctgctcaacaataattgtattgtcttgatct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4993403 |
ttatttattcatcctgctcaacaataattgtattgtcttgatct |
4993360 |
T |
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