View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4806_high_23 (Length: 289)
Name: NF4806_high_23
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 27939594 - 27939856
Alignment:
| Q |
10 |
attattctccaaagcattaatttgtaacaaaccattatcccgcttttccattgaggacacttgttgtgaacctacattttcattttcatgttgtggccca |
109 |
Q |
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| T |
27939594 |
attattctccaaagcattaatttgtgacaaaccactatctcgcttttccattgaagacacttgttgtggacctacattttcattttcatgttgtggccca |
27939693 |
T |
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| Q |
110 |
ttgtcgttaacattattacctcgttcaatgtttgatgacaacaattcttcctcagtattttgtcgttgaggaagaacaatatcatcagggttcaccttat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27939694 |
ttgtcgttaacattattacctcgttcaatgtttgatgacaacaattcttcctcagtattttgtcgttgaggaagaacaatatcatcagggttcaccttat |
27939793 |
T |
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| Q |
210 |
agcgacacagtgggcacgaggaatgttcatcaagccacatgtcaacacattccatgtggaaag |
272 |
Q |
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| T |
27939794 |
agcgacacagtgggcacgaggaatgttcatcaagccacatgtcaacacattccatgtggaaag |
27939856 |
T |
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