View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4806_high_25 (Length: 280)
Name: NF4806_high_25
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 6729282 - 6729171
Alignment:
| Q |
23 |
tttcagtctcgccgtttcaactcctccacactacaatttttcctactccacaccaccctatcccaagtaccaaacaccaccatatttttgacaaacacat |
122 |
Q |
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| T |
6729282 |
tttcagtttcgccatttcaactcctccacactacaatttttcctactccacaccaccctatcccacgtaccaaacaccaccatattttggacaaacacat |
6729183 |
T |
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| Q |
123 |
aactcccaccca |
134 |
Q |
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| T |
6729182 |
aactcccaccca |
6729171 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 160
Target Start/End: Original strand, 33434286 - 33434315
Alignment:
| Q |
131 |
cccaatacctccaccaaaaccttttccgat |
160 |
Q |
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| T |
33434286 |
cccaatacctccaccaaaaccttttccgat |
33434315 |
T |
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