View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4806_high_35 (Length: 241)
Name: NF4806_high_35
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 13885181 - 13885401
Alignment:
| Q |
1 |
cgaaacatttgagacagtcaaagcttaacggaactgattgtgcaaacacattgaagtggttaggtgagagtgattgaaattttacctcacccaattgttg |
100 |
Q |
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| T |
13885181 |
cgaaacatttgagacagtcgaagcttaacagaactgattgtgcaaacacattgaagtggttaggtgaaagtaattgaaattttacctcacccaattgttg |
13885280 |
T |
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| Q |
101 |
ttctaaatagacattcgttcctattggaagagtgttggcaatctcttgataggtgaatttgaagtttgaccacggcgtttgttgtttacaaatgaaagat |
200 |
Q |
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| T |
13885281 |
ttttgaatagaaagtcgttcctattggaagagtgttggcaatctcttgacgggtgaatctgaagtttgacctcggcgtttgttgtttacaactgaaagat |
13885380 |
T |
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| Q |
201 |
tcctcagaatcttcaacaatt |
221 |
Q |
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| T |
13885381 |
tcctcagaatcttcaacaatt |
13885401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 37191407 - 37191319
Alignment:
| Q |
1 |
cgaaacatttgagacagtcaaagcttaacggaactgattgtgcaaacacattgaagtggttaggtgagagtgattgaaattttacctca |
89 |
Q |
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| T |
37191407 |
cgaaacatttgagacagtcgaagcttagcggaactgattgtgcaaacacattgaagtggttaggtgagagtgattgaaattttacctca |
37191319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 22518033 - 22518121
Alignment:
| Q |
1 |
cgaaacatttgagacagtcaaagcttaacggaactgattgtgcaaacacattgaagtggttaggtgagagtgattgaaattttacctca |
89 |
Q |
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| T |
22518033 |
cgaaacatttgagacagtcgaagcttaaaggaattgattgtgcaaacacttggaagtggttagatgagagtgattgaaattttacctca |
22518121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 33457255 - 33457169
Alignment:
| Q |
1 |
cgaaacatttgagacagtcaaagcttaacggaactgattgtgcaaacacattgaagtggttaggtgagagtgattgaaattttacct |
87 |
Q |
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|||||||||||| | |||| || ||||| |||| ||||| || | |||||||||| |||||| |||||||||| ||||||||||| |
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| T |
33457255 |
cgaaacatttgacagagtccaaccttaaaggaattgattatgaagacacattgaatgtgttaggcgagagtgattaaaattttacct |
33457169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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