View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4806_high_37 (Length: 239)

Name: NF4806_high_37
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4806_high_37
NF4806_high_37
[»] chr4 (19 HSPs)
chr4 (89-222)||(27567365-27567498)
chr4 (102-222)||(27571733-27571853)
chr4 (102-222)||(27421842-27421961)
chr4 (163-222)||(27559211-27559270)
chr4 (1-49)||(27567538-27567586)
chr4 (162-222)||(27419041-27419101)
chr4 (94-222)||(27414204-27414334)
chr4 (151-222)||(27466931-27467002)
chr4 (151-222)||(27474002-27474073)
chr4 (151-222)||(27505661-27505732)
chr4 (151-222)||(27513735-27513806)
chr4 (162-213)||(27556349-27556400)
chr4 (173-222)||(27444775-27444824)
chr4 (151-222)||(27480011-27480082)
chr4 (151-222)||(27516568-27516639)
chr4 (151-222)||(27526071-27526142)
chr4 (164-222)||(27557599-27557657)
chr4 (151-223)||(27469569-27469641)
chr4 (182-222)||(27600663-27600703)
[»] chr5 (1 HSPs)
chr5 (151-222)||(1759362-1759433)


Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 89 - 222
Target Start/End: Complemental strand, 27567498 - 27567365
Alignment:
Q  89 tgcgctctgtacaaattagcctcaactattctatctaaatctccatttgcatgaccttcagctcaattcaagtgagaagtgagttctaagaaagcatctt 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27567498 tgcgctctgtacaaattagcctcaactattctatctaaatctccatttgcatgaccttcagctcaattcaagtgagaagtgagttctaagaaagcatctt 27567399  T
Q  189 cgctgcaaggaattgtgagaccacctattggatg 222  Q
    ||||||||||||||||||||||||| ||||||||    
T  27567398 cgctgcaaggaattgtgagaccacccattggatg 27567365  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 102 - 222
Target Start/End: Complemental strand, 27571853 - 27571733
Alignment:
Q  102 aattagcctcaactattctatctaaatctccatttgcatgaccttcagctcaattcaagtgagaagtgagttctaagaaagcatcttcgctgcaaggaat 201  Q
    ||||||| ||||||| |||||||||||||||||| |||||| ||  ||||||||||||| ||||||| || | || |||  |||| |||| |||||||||    
T  27571853 aattagcttcaactaatctatctaaatctccattagcatgatctagagctcaattcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaat 27571754  T
Q  202 tgtgagaccacctattggatg 222  Q
    |||||||||||| ||||||||    
T  27571753 tgtgagaccacccattggatg 27571733  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 102 - 222
Target Start/End: Original strand, 27421842 - 27421961
Alignment:
Q  102 aattagcctcaactattctatctaaatctccatttgcatgaccttcagctcaattcaagtgagaagtgagttctaagaaagcatcttcgctgcaaggaat 201  Q
    ||||||||| ||||| ||||||||| |||  ||| ||||||  | | |||||||||||  |||||||||||| |||||||| |||||| |||||||||||    
T  27421842 aattagccttaactaatctatctaagtctg-attagcatgatttacggctcaattcaatcgagaagtgagttgtaagaaagaatcttcactgcaaggaat 27421940  T
Q  202 tgtgagaccacctattggatg 222  Q
    ||||||||||||  |||||||    
T  27421941 tgtgagaccacccgttggatg 27421961  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 27559211 - 27559270
Alignment:
Q  163 agaagtgagttctaagaaagcatcttcgctgcaaggaattgtgagaccacctattggatg 222  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  27559211 agaagtgagttgtaagaaagcatcttcactgcaaggaattgtgagaccacccattggatg 27559270  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 27567586 - 27567538
Alignment:
Q  1 tctcattcatgaaacattccctatttccgcaggaatgattaatacatgg 49  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27567586 tctcattcaggaaacattccctatttccgcaggaatgattaatacatgg 27567538  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 27419041 - 27419101
Alignment:
Q  162 gagaagtgagttctaagaaagcatcttcgctgcaaggaattgtgagaccacctattggatg 222  Q
    |||||||||||| ||||||||||||||| | |||||||||||| |||||||| ||||||||    
T  27419041 gagaagtgagttgtaagaaagcatcttcaccgcaaggaattgtaagaccacccattggatg 27419101  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 27414204 - 27414334
Alignment:
Q  94 tctgtacaaattagcctcaactattctatctaaatctccatttgcat--gaccttcagctcaattcaagtgagaagtgagttctaagaaagcatcttcgc 191  Q
    ||||| ||||||||||||||||| |||||||||| |||| || ||||   | || |||||||||||| | |||||||||| | |  |||  ||||||| |    
T  27414204 tctgtgcaaattagcctcaactaatctatctaaagctccgttagcataatatctacagctcaattcatgcgagaagtgaggttttggaattcatcttcac 27414303  T
Q  192 tgcaaggaattgtgagaccacctattggatg 222  Q
    |||| |||||||| |||||||| ||||||||    
T  27414304 tgcacggaattgtaagaccacccattggatg 27414334  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 27467002 - 27466931
Alignment:
Q  151 tcaattcaagtgagaagtgagttctaagaaagcatcttcgctgcaaggaattgtgagaccacctattggatg 222  Q
    ||||||||||  ||||||||  ||||||||| | ||||| ||||||||||| ||||||||||| ||||||||    
T  27467002 tcaattcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatg 27466931  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 27474073 - 27474002
Alignment:
Q  151 tcaattcaagtgagaagtgagttctaagaaagcatcttcgctgcaaggaattgtgagaccacctattggatg 222  Q
    |||||||||| |||||||||  ||||||||| | ||||| | ||||||||| ||||||||||| ||||||||    
T  27474073 tcaattcaagcgagaagtgatgtctaagaaaacgtcttctccgcaaggaatggtgagaccacccattggatg 27474002  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 27505661 - 27505732
Alignment:
Q  151 tcaattcaagtgagaagtgagttctaagaaagcatcttcgctgcaaggaattgtgagaccacctattggatg 222  Q
    |||||||||||||||| |||  |||||||||   ||||| ||||||||||| ||||||||||| ||||||||    
T  27505661 tcaattcaagtgagaaatgatatctaagaaaatctcttctctgcaaggaatagtgagaccacccattggatg 27505732  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 27513735 - 27513806
Alignment:
Q  151 tcaattcaagtgagaagtgagttctaagaaagcatcttcgctgcaaggaattgtgagaccacctattggatg 222  Q
    |||||||||| |||||||||  ||||||||  | ||||| ||||||||||| ||||||||||| ||||||||    
T  27513735 tcaattcaagcgagaagtgatatctaagaatacttcttctctgcaaggaatagtgagaccacccattggatg 27513806  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 27556349 - 27556400
Alignment:
Q  162 gagaagtgagttctaagaaagcatcttcgctgcaaggaattgtgagaccacc 213  Q
    |||||| ||||| ||||||||||||||| ||||| |||||||||||||||||    
T  27556349 gagaagagagttgtaagaaagcatcttcactgcatggaattgtgagaccacc 27556400  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 27444775 - 27444824
Alignment:
Q  173 tctaagaaagcatcttcgctgcaaggaattgtgagaccacctattggatg 222  Q
    ||||||||| | ||||| ||||||||||||||||||||||| ||||||||    
T  27444775 tctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatg 27444824  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 27480082 - 27480011
Alignment:
Q  151 tcaattcaagtgagaagtgagttctaagaaagcatcttcgctgcaaggaattgtgagaccacctattggatg 222  Q
    |||||||||||||||| | |  |||||||||   ||||| ||||||||||| ||||||||||| ||||||||    
T  27480082 tcaattcaagtgagaattaatatctaagaaaatgtcttctctgcaaggaatggtgagaccacccattggatg 27480011  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 27516568 - 27516639
Alignment:
Q  151 tcaattcaagtgagaagtgagttctaagaaagcatcttcgctgcaaggaattgtgagaccacctattggatg 222  Q
    ||||||||||| ||||||||  ||||||||| | |||||  |||||||||| |||||||| || ||||||||    
T  27516568 tcaattcaagttagaagtgatatctaagaaaacttcttctttgcaaggaatagtgagaccccccattggatg 27516639  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 27526071 - 27526142
Alignment:
Q  151 tcaattcaagtgagaagtgagttctaagaaagcatcttcgctgcaaggaattgtgagaccacctattggatg 222  Q
    |||||||||  |||||||||  ||||||||| | ||||| ||||||||||| |||||||||||  |||||||    
T  27526071 tcaattcaaacgagaagtgatctctaagaaaacgtcttctctgcaaggaatagtgagaccacccgttggatg 27526142  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 27557657 - 27557599
Alignment:
Q  164 gaagtgagttctaagaaagcatcttcgctgcaaggaattgtgagaccacctattggatg 222  Q
    |||||||  ||||||||| ||||||| ||||| ||||| ||||||||||| ||||||||    
T  27557657 gaagtgatatctaagaaaacatcttctctgcatggaatagtgagaccacccattggatg 27557599  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 27469641 - 27469569
Alignment:
Q  151 tcaattcaagtgagaagtgagttctaagaaagcatcttcgctgcaaggaattgtgagaccacctattggatgt 223  Q
    |||||| |||||||| ||||  |||||||||   ||||| ||||||||||| || |||||||| |||||||||    
T  27469641 tcaattgaagtgagaggtgatatctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgt 27469569  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 27600703 - 27600663
Alignment:
Q  182 gcatcttcgctgcaaggaattgtgagaccacctattggatg 222  Q
    ||||||||  |||||||||||||||||||||| ||||||||    
T  27600703 gcatcttctttgcaaggaattgtgagaccacccattggatg 27600663  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 1759433 - 1759362
Alignment:
Q  151 tcaattcaagtgagaagtgagttctaagaaagcatcttcgctgcaaggaattgtgagaccacctattggatg 222  Q
    ||||||||||||||||||||  ||||||||| | ||||| |||||| |||| ||||||||||| ||||||||    
T  1759433 tcaattcaagtgagaagtgatatctaagaaaacttcttctctgcaaagaatggtgagaccacccattggatg 1759362  T

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