View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4806_low_11 (Length: 421)

Name: NF4806_low_11
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4806_low_11
NF4806_low_11
[»] chr3 (3 HSPs)
chr3 (1-413)||(31800181-31800591)
chr3 (129-236)||(31799553-31799660)
chr3 (185-236)||(35942777-35942829)
[»] chr8 (4 HSPs)
chr8 (1-98)||(21190607-21190706)
chr8 (173-236)||(21190126-21190189)
chr8 (165-263)||(36338473-36338572)
chr8 (185-262)||(20112277-20112354)
[»] chr2 (2 HSPs)
chr2 (12-98)||(45114273-45114360)
chr2 (185-262)||(33002934-33003010)
[»] chr7 (4 HSPs)
chr7 (1-98)||(32390512-32390610)
chr7 (173-236)||(32390009-32390072)
chr7 (194-236)||(3987246-3987288)
chr7 (173-236)||(32390879-32390943)
[»] scaffold0169 (1 HSPs)
scaffold0169 (2-95)||(27276-27370)
[»] chr4 (2 HSPs)
chr4 (184-263)||(11148096-11148175)
chr4 (184-263)||(11147801-11147881)
[»] chr5 (5 HSPs)
chr5 (160-236)||(971215-971293)
chr5 (165-236)||(25215465-25215536)
chr5 (165-236)||(25279616-25279687)
chr5 (165-255)||(33136568-33136659)
chr5 (185-236)||(36681851-36681903)
[»] chr1 (4 HSPs)
chr1 (185-263)||(36475971-36476050)
chr1 (197-263)||(27585998-27586063)
chr1 (185-236)||(36475356-36475407)
chr1 (185-236)||(47445775-47445827)


Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 31800181 - 31800591
Alignment:
Q  1 gaaaagtggttgtgatgttgtataccgttaattattgagtaatgtaaacaaccatatatttttgcatgtttgtcaattattttgcatatgttgtgtaann 100  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||      
T  31800181 gaaaagtggttgtgatgttctatgccgttaattattgagtaatgtaaacaaccatatttttttgcatgtttgtcaattattttgcatatgttgtgtaatt 31800280  T
Q  101 nnnnnnnnnnnnnggcagagccaacatttaaagttcggtccacatggaggtatcatatatataattaactgtcacgtcatagcgtttaacaatcaaaaca 200  Q
                 ||||||| ||||||||||||||||||||| |||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||    
T  31800281 ttttattttttttggcagaggcaacatttaaagttcggtccatatggaggtgtcatgtatacaattaactgtcacgtcatagcgtttaacaatcaaaaca 31800380  T
Q  201 aatggagggggtaactgactaacgtttcacaatttcgtaggagttttagaagtttctcaaaagctatgggannnnnnnnatgaaagttacaatttcgggg 300  Q
    || ||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||   ||||||        | |||||||||||||||||||    
T  31800381 aacggagggggtaactgactaacgtttcacaattttataggagttttagaagtttcttaaaaatcatggga-ttttttgacgaaagttacaatttcgggg 31800479  T
Q  301 gagtttttgtctattcactccatgaaaatttcaaaagttcactaggatattttcttctgcggaaaaagttcactaatatataacatcatcgaatcaaaat 400  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | ||||||||||||| |||| ||||    
T  31800480 gagtttttgcctattcactccatgaaaatttcaaaagttcactaggatattttcttctgagg-aaaagttcactgagatataacatcatcaaatccaaat 31800578  T
Q  401 ccgacagaataat 413  Q
    |||||||||||||    
T  31800579 ccgacagaataat 31800591  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 129 - 236
Target Start/End: Complemental strand, 31799660 - 31799553
Alignment:
Q  129 taaagttcggtccacatggaggtatcatatatataattaactgtcacgtcatagcgtttaacaatcaaaacaaatggagggggtaactgactaacgtttc 228  Q
    |||||||| ||||||||| ||||  || ||||  | ||||||| || ||||||| |||||||| |||||||||| ||||||||||| |||||||| |||     
T  31799660 taaagttcagtccacatgaaggtgccacatattcagttaactgccatgtcatagggtttaacagtcaaaacaaacggagggggtaattgactaacatttg 31799561  T
Q  229 acaatttc 236  Q
    ||||||||    
T  31799560 acaatttc 31799553  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 35942777 - 35942829
Alignment:
Q  185 tttaacaatcaaaacaaatgga-gggggtaactgactaacgtttcacaatttc 236  Q
    |||||||| ||||||||||||| |||||||| |||||||||||| ||||||||    
T  35942777 tttaacaaccaaaacaaatggaggggggtaattgactaacgtttaacaatttc 35942829  T

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Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 21190607 - 21190706
Alignment:
Q  1 gaaaagtggttgtgatgttgtataccgttaattattgagtaatgtaaacaaccatata---tttttgcatgtttgtcaattattttgcatatgttgtgta 97  Q
    |||||||| |||||||||||||||  ||||||||||||||||||||||||||| ||||   |||||||||| ||||||||||||||||||||||||||||    
T  21190607 gaaaagtgattgtgatgttgtatattgttaattattgagtaatgtaaacaaccctatattttttttgcatg-ttgtcaattattttgcatatgttgtgta 21190705  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 21190189 - 21190126
Alignment:
Q  173 cacgtcatagcgtttaacaatcaaaacaaatggagggggtaactgactaacgtttcacaatttc 236  Q
    |||||||||  |||||||| |||| ||||| ||||||||||| |||||||||||| | ||||||    
T  21190189 cacgtcatatggtttaacagtcaatacaaaaggagggggtaattgactaacgtttgataatttc 21190126  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 263
Target Start/End: Original strand, 36338473 - 36338572
Alignment:
Q  165 ttaactgtcacgtcatagcgtttaacaatcaaaacaaatgg-agggggtaactgactaacgtttcacaatttcgtaggagttttagaagtttctcaaaag 263  Q
    ||||||| ||||||| |  |||||||||||||||||||||| | | | ||| |||||||||||| |||||||  || | ||||| ||||||||| |||||    
T  36338473 ttaactgccacgtcacatagtttaacaatcaaaacaaatggaatgagataattgactaacgtttgacaattttataagggtttttgaagtttcttaaaag 36338572  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 262
Target Start/End: Original strand, 20112277 - 20112354
Alignment:
Q  185 tttaacaatcaaaacaaatggagggggtaactgactaacgtttcacaatttcgtaggagttttagaagtttctcaaaa 262  Q
    |||||||  ||||||||| ||||||||||| |||||||||||| | ||||||   || ||||| ||||||||| ||||    
T  20112277 tttaacagccaaaacaaacggagggggtaattgactaacgtttgataatttcagtggggtttttgaagtttcttaaaa 20112354  T

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Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 45114360 - 45114273
Alignment:
Q  12 gtgatgttgtataccgttaattattgagtaatgtaaacaaccatatat--ttttgcatgtttgtcaattattttgcatatgttgtgtaa 98  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||  |||||||||  ||||||||||||||||||||||||||||    
T  45114360 gtgatgttgtataccattaattattaagtaatgtaaacaaccatatatttttttgcatg-ctgtcaattattttgcatatgttgtgtaa 45114273  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 33003010 - 33002934
Alignment:
Q  185 tttaacaatcaaaacaaatggagggggtaactgactaacgtttcacaatttcgtaggagttttagaagtttctcaaaa 262  Q
    |||||||  ||||||||| ||||||||||| | |||||||||| |||||||| |  ||||||| ||||||||| ||||    
T  33003010 tttaacatccaaaacaaacggagggggtaattaactaacgtttgacaatttcat-cgagtttttgaagtttcttaaaa 33002934  T

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Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 32390512 - 32390610
Alignment:
Q  1 gaaaagtggttgtgatgttgtataccgttaattattgagtaatgtaaacaaccatatattttt--gcatgtttgtcaattattttgcatatgttgtgtaa 98  Q
    |||||||| |||| || ||| |||| |||||||||||||||||||||||||| ||||||||||  || || | |||||||||||||||||||||||||||    
T  32390512 gaaaagtgtttgtcatattgaatacggttaattattgagtaatgtaaacaactatatatttttttgcgtgct-gtcaattattttgcatatgttgtgtaa 32390610  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 32390072 - 32390009
Alignment:
Q  173 cacgtcatagcgtttaacaatcaaaacaaatggagggggtaactgactaacgtttcacaatttc 236  Q
    |||||||||  ||||||||| ||||| ||||||||||| ||| |||||||||||| ||||||||    
T  32390072 cacgtcatatggtttaacaaccaaaataaatggaggggataattgactaacgtttgacaatttc 32390009  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 3987246 - 3987288
Alignment:
Q  194 caaaacaaatggagggggtaactgactaacgtttcacaatttc 236  Q
    ||||||||| ||||||||||| |||||||||||| ||||||||    
T  3987246 caaaacaaacggagggggtaattgactaacgtttgacaatttc 3987288  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 32390879 - 32390943
Alignment:
Q  173 cacgtcatagcgtttaacaatcaaaacaaatggaggggg-taactgactaacgtttcacaatttc 236  Q
    |||||||||  |||||||| |||||||||| |||||||| ||| |||||||||||| | ||||||    
T  32390879 cacgtcatatggtttaacagtcaaaacaaacggaggggggtaattgactaacgtttgataatttc 32390943  T

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Target: scaffold0169 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 2 - 95
Target Start/End: Original strand, 27276 - 27370
Alignment:
Q  2 aaaagtggttgtgatgttgtataccgttaattattgagtaa-tgtaaacaaccatatatttttg-catgtttgtcaattattttgcatatgttgtg 95  Q
    ||||||| |||||||||||| ||| |||| ||||||||||| ||||||||||||| |||||||  |||||| ||||||||||||||||||||||||    
T  27276 aaaagtgattgtgatgttgtgtactgttagttattgagtaaatgtaaacaaccatctatttttttcatgtt-gtcaattattttgcatatgttgtg 27370  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 263
Target Start/End: Original strand, 11148096 - 11148175
Alignment:
Q  184 gtttaacaatcaaaacaaatggagggggtaactgactaacgtttcacaatttcgtaggagttttagaagtttctcaaaag 263  Q
    ||||||||| ||||||||| ||||||||||| |||||||| ||| |||||||| || | ||||| ||||||||| |||||    
T  11148096 gtttaacaaccaaaacaaacggagggggtaattgactaacatttgacaatttcataagggtttttgaagtttcttaaaag 11148175  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 11147881 - 11147801
Alignment:
Q  184 gtttaacaatcaaaacaaatggaggggg-taactgactaacgtttcacaatttcgtaggagttttagaagtttctcaaaag 263  Q
    ||||||||  ||||||||| |||||||| ||| |||||||||||| ||||||||   ||| |||| ||||||||| |||||    
T  11147881 gtttaacagccaaaacaaacggaggggggtaattgactaacgtttgacaatttcaagggaatttttgaagtttcttaaaag 11147801  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 971215 - 971293
Alignment:
Q  160 tataattaactgtcacgtcatagcgtttaacaatcaaaacaaatggagggggtaactgact--aacgtttcacaatttc 236  Q
    |||| ||||||| |||||| ||| ||||||||||||||||||||||| ||||||| ||| |  ||||||| ||||||||    
T  971215 tatagttaactgccacgtcgtagggtttaacaatcaaaacaaatggaaggggtaattgagtaaaacgtttgacaatttc 971293  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 25215465 - 25215536
Alignment:
Q  165 ttaactgtcacgtcatagcgtttaacaatcaaaacaaatggagggggtaactgactaacgtttcacaatttc 236  Q
    |||||||||||||||||  || ||||||| |||||||| ||||||| |||| ||||||| ||| ||||||||    
T  25215465 ttaactgtcacgtcatatggtgtaacaataaaaacaaacggaggggataaccgactaacatttgacaatttc 25215536  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 25279616 - 25279687
Alignment:
Q  165 ttaactgtcacgtcatagcgtttaacaatcaaaacaaatggagggggtaactgactaacgtttcacaatttc 236  Q
    |||||||||||||||||  || ||||||| |||||||| ||||||| |||| ||||||| ||| ||||||||    
T  25279616 ttaactgtcacgtcatatggtgtaacaataaaaacaaacggaggggataaccgactaacatttgacaatttc 25279687  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 255
Target Start/End: Original strand, 33136568 - 33136659
Alignment:
Q  165 ttaactgtcacgtcatagcgtttaacaatcaaaacaaatggaggggg-taactgactaacgtttcacaatttcgtaggagttttagaagttt 255  Q
    ||||||| |||||||||| || |||||  ||||||| |||||||||| ||| |||||||||||| ||||||||   |||||||| |||||||    
T  33136568 ttaactgccacgtcatagagtgtaacagccaaaacagatggaggggggtaattgactaacgtttaacaatttcaggggagtttttgaagttt 33136659  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 36681851 - 36681903
Alignment:
Q  185 tttaacaatcaaaacaaatggaggggg-taactgactaacgtttcacaatttc 236  Q
    ||||||| |||||||||| |||||||| ||| |||||||||||| ||||||||    
T  36681851 tttaacagtcaaaacaaacggaggggggtaattgactaacgtttgacaatttc 36681903  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 36475971 - 36476050
Alignment:
Q  185 tttaacaatcaaaacaaatggaggggg-taactgactaacgtttcacaatttcgtaggagttttagaagtttctcaaaag 263  Q
    |||||||  |||||||||||||||||| ||| |||||||||||| |||||||| | || ||||| ||||||||| |||||    
T  36475971 tttaacagccaaaacaaatggaggggggtaattgactaacgtttaacaatttcatgggggtttttgaagtttcttaaaag 36476050  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 27585998 - 27586063
Alignment:
Q  197 aacaaatggagggggtaactgactaacgtttcacaatttcgtaggag-ttttagaagtttctcaaaag 263  Q
    |||||||||||||||||| |||||||||||| ||||||||  ||||| |||| ||||||||| |||||    
T  27585998 aacaaatggagggggtaattgactaacgtttaacaatttc--aggagttttttgaagtttcttaaaag 27586063  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 36475407 - 36475356
Alignment:
Q  185 tttaacaatcaaaacaaatggagggggtaactgactaacgtttcacaatttc 236  Q
    |||||||  ||||||||| ||||||||||| |||||||||||| ||||||||    
T  36475407 tttaacagccaaaacaaacggagggggtaattgactaacgtttaacaatttc 36475356  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 47445775 - 47445827
Alignment:
Q  185 tttaacaatcaaaacaaatgga-gggggtaactgactaacgtttcacaatttc 236  Q
    |||||||| ||||||||||||| |||||||| |||||||||||| | ||||||    
T  47445775 tttaacaaccaaaacaaatggaggggggtaattgactaacgtttgataatttc 47445827  T

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