View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4806_low_13 (Length: 391)
Name: NF4806_low_13
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 377
Target Start/End: Original strand, 29705067 - 29705436
Alignment:
| Q |
8 |
gaaaagaaccgcactgcaagcactgccacagaatcagctggctgagtaatagaaaatttattattaagtgaatttctgtaatgttggatgaaaccacttg |
107 |
Q |
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| T |
29705067 |
gaaaagaactgcactgcaagcactgccacagaatcagctggctgagtaatagaaaatttattattaagtgaatttctgtaatgttggatgaaaccacttg |
29705166 |
T |
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| Q |
108 |
aaatgtggaactctctttggttcttagatgttgaggtcaaaatccaaacctttggtttggttatgcttttttcattttactttgcaaattttgttagtgt |
207 |
Q |
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| T |
29705167 |
aaatgtggaactctctttggttcttagatgttgaggtcaaaatccaaacctttggtttggttgtgcttttttcattttactttgcaaattttgatagtgt |
29705266 |
T |
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| Q |
208 |
attgcatcattacaataaacttttgcggcacacttttatgctagcaagttttacgatgcttattattaaatgaagattactcataatgaaattatttgaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29705267 |
attgcatcattacaataaacttttgcggcacacttttatgctggcaagttttacgatgcttattattaaatgaagattactcataatgaaattatttgaa |
29705366 |
T |
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| Q |
308 |
tttttataagttgtcaaagttcttaatttatgtaaactgctctgtttgatataatgagccaatgttggtg |
377 |
Q |
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| T |
29705367 |
tttttataagttgtcaaagttcttaatttatgtaaactgctctgtttgatataatgaaccaatgttggtg |
29705436 |
T |
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