View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4806_low_16 (Length: 371)
Name: NF4806_low_16
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 8583876 - 8583587
Alignment:
| Q |
18 |
aaatctacggtcaagattttatattaaaaaacagccaaataaaatcacatgagtgtgttattattttattgatctggaattttgtgttggtgacatagag |
117 |
Q |
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| T |
8583876 |
aaatctacggtcaagattttatattcaaaaacagccaaataaaatcacatgagtgtgttattattttattgatctggaattttgtgttggtgacatagag |
8583777 |
T |
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| Q |
118 |
tgaaacaaaatcaataaattaaaaacaacaacaacatagaaataaacgaccttaatatgacacagcacaaagacagacgcaaatctcaatacaaacatca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8583776 |
tgaaacaaaatcaataaattaaaaacaacaacaacatagaaataaccgaccttaatatgacacaacacaaagacagacgcaaatctcaatacaaacatca |
8583677 |
T |
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| Q |
218 |
accacagacac------agaccaagaaatnnnnnnncgttacaaagaccaaattaaatagcaataaattattattttaatgaaaaatgag |
301 |
Q |
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||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8583676 |
accacagacacagacacagaccaagaaataaaaaaacgttacaaagaccaaattaaatagcaataaattattattttaatgaaaaatgag |
8583587 |
T |
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