View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4806_low_2 (Length: 632)
Name: NF4806_low_2
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 486
Target Start/End: Original strand, 12640789 - 12641260
Alignment:
| Q |
19 |
catacacatttgtgaacccaacatattggattagtccaataaacaatgcagctgacatggattgtcttcaatggagcaacgaccaaacaacactttgtta |
118 |
Q |
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| T |
12640789 |
catacacatttgtgaacccaacatattggattagtccaataaacaatgcagctgacatggattgtcttcaatggagcaacgaccaaacaacactttgtta |
12640888 |
T |
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| Q |
119 |
caattgtgactcatgcaaggctggtttgttggcaaatcttaggaaggaatggaaaagagctaatgtgatattgatcatcactcttgttgttttaattgtg |
218 |
Q |
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| T |
12640889 |
caactgtgactcatgcaaggctggtttgttggcaaatcttaggaaggaatggaaaagagctaatgtgatattgatcatcactgttgtcgttttaattgtg |
12640988 |
T |
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| Q |
219 |
gtttatttgattggatgctttgcttttaggaatgccaaaactgaggatctctttcgtaagtacaaacaaggctacacttgatcataagatttttagcatg |
318 |
Q |
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| T |
12640989 |
gtttatttgattggatgctttgcttttaggaatgccaaaactgaggatctctttcgtaagtacaaacaaggctacacttgatcataagatttttagcatg |
12641088 |
T |
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| Q |
319 |
taagatgcaaagtttggtgctttaacattggtgatgaaattggtcgttctgtttagtttgattactaannnnnnnnnnngttatattattattagtttaa |
418 |
Q |
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| T |
12641089 |
taagatgtaaagtttggtgctttaacattggtgatgaaattggtcgttctgtttagtttaattactagtttttttttttgttatattattattagtttaa |
12641188 |
T |
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| Q |
419 |
ctagtaatatgaagttcgaccag----taattaaagtcgtttcaacaattgtttcaccaaggaattaaactc |
486 |
Q |
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| T |
12641189 |
ctagtaatctgaagttcgatcagtagataattaaagtcgtttcaacaattgtttcatcaaagaatcaaactc |
12641260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 494 - 620
Target Start/End: Original strand, 12641293 - 12641419
Alignment:
| Q |
494 |
caattgtaacttagttaaatcctagctagtttcattatgggtcatgctaaaaatctactatgaatgaatttgtgtgttccacttattttgagaagaaaag |
593 |
Q |
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| T |
12641293 |
caattgtaacttagttaaatcctagctagtttcattatgggtcatgctaaaaatctactatgaatgaatttgtgtgttccacttattttgagaagaaaag |
12641392 |
T |
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| Q |
594 |
atgcttgttttttatgggtagtgatga |
620 |
Q |
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| T |
12641393 |
atgcttgttttttatgggtagtgatga |
12641419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 21 - 299
Target Start/End: Original strand, 27780233 - 27780511
Alignment:
| Q |
21 |
tacacatttgtgaacccaacatattggattagtccaataaacaatgcagctgacatggattgtcttcaatggagcaacgaccaaacaacactttgttaca |
120 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||| | ||||||||||| | |||||||||| || |||||| |||||| || | |
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| T |
27780233 |
tacacatttgtgaacccaacatattggattagcccaattaacacaaatgaagacatggattgcatgaaatggagcaatgaacaaacacaactttgctata |
27780332 |
T |
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| Q |
121 |
attgtgactcatgcaaggctggtttgttggcaaatcttaggaaggaatggaaaagagctaatgtgatattgatcatcactcttgttgttttaattgtggt |
220 |
Q |
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| T |
27780333 |
attgtgactcatgcaaagctggtttgttagcaactattaggatagaatggaggaaagccaatgtgatattaatagttacattgattggtttaattcttgt |
27780432 |
T |
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| Q |
221 |
ttatttgattggatgctttgcttttaggaatgccaaaactgaggatctctttcgtaagtacaaacaaggctacacttga |
299 |
Q |
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| T |
27780433 |
ttatttgtttgggtgttttgcttttaggaatgccaaaactgaggagctatttcgcaaatacaagcaaggctacacttga |
27780511 |
T |
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