View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4806_low_21 (Length: 312)

Name: NF4806_low_21
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4806_low_21
NF4806_low_21
[»] chr5 (9 HSPs)
chr5 (11-294)||(34230628-34230911)
chr5 (33-294)||(34238683-34238944)
chr5 (24-232)||(42125507-42125715)
chr5 (26-212)||(42130734-42130920)
chr5 (24-212)||(41711694-41711882)
chr5 (65-289)||(42118947-42119183)
chr5 (26-213)||(41569923-41570110)
chr5 (256-294)||(42125742-42125780)
chr5 (239-290)||(42130947-42130998)
[»] chr6 (2 HSPs)
chr6 (27-234)||(25520908-25521115)
chr6 (240-290)||(25520840-25520890)
[»] chr3 (2 HSPs)
chr3 (24-214)||(8524962-8525152)
chr3 (240-290)||(8525199-8525249)
[»] chr4 (2 HSPs)
chr4 (42-210)||(11120299-11120467)
chr4 (244-290)||(11120516-11120562)
[»] chr2 (1 HSPs)
chr2 (40-212)||(12250344-12250516)


Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 294
Target Start/End: Complemental strand, 34230911 - 34230628
Alignment:
Q  11 cagagaaatcgttagagaaataattgttcgaaaggttgagcatttgaaggtgagcaagatggaaaagggtactattaggatggagtataccttgaaagcc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34230911 cagagaaatcgttagagaaataattgttcgaaaggttgagcatttgaaggtgagcaagatggaaaagggtactattaggatggagtataccttgaaagcc 34230812  T
Q  111 ttcacagccaaggttaaggccaatgacatgaccagatacggtgtcacacgtgacaccatgccatgagcagcaatcagtcccatttttccatgttgctgtt 210  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34230811 ttcacagccaaggttaaggccaatgacgtgaccagatacggtgtcacacgtgacaccatgccatgagcagcaatcagtcccatttttccatgttgctgtt 34230712  T
Q  211 ttcataggagattcaacacaaggagtatctatagtgaaggaggacttgaactgaagcaaagcaaagctctcatcatgatgacat 294  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34230711 ttcataggagatttaacacaaggagtatctatagtgaaggaggacttgaactgaagcaaagcaaagctctcatcatgatgacat 34230628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 33 - 294
Target Start/End: Complemental strand, 34238944 - 34238683
Alignment:
Q  33 attgttcgaaaggttgagcatttgaaggtgagcaagatggaaaagggtactattaggatggagtataccttgaaagccttcacagccaaggttaaggcca 132  Q
    |||||| |||||||||||  |||| || ||| ||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34238944 attgttagaaaggttgagtgtttggagatgaacaatattgaaaagggtactattaggatggagtataccttgaaagccttcacaaccaaggttaaggcca 34238845  T
Q  133 atgacatgaccagatacggtgtcacacgtgacaccatgccatgagcagcaatcagtcccatttttccatgttgctgttttcataggagattcaacacaag 232  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34238844 atgacgtgaccagatacggtgtcacacgtgacaccatgccatgagcagcaatcagtcccatttttccatgttgctgttttcataggagatttaacacaag 34238745  T
Q  233 gagtatctatagtgaaggaggacttgaactgaagcaaagcaaagctctcatcatgatgacat 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34238744 gagtatctatagtgaaggaggacttgaactgaagcaaagcaaagctctcatcatgatgacat 34238683  T

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Target: chr5; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 24 - 232
Target Start/End: Original strand, 42125507 - 42125715
Alignment:
Q  24 agagaaataattgttcgaaaggttgagcatttgaaggtgagcaagatggaaaagggtactattaggatggagtataccttgaaagccttcacagccaagg 123  Q
    |||||||| |||||| |||||||||||  ||||||| ||| |||||| |||||||||||| |||||||| ||| ||||||||| |||||||||||||||     
T  42125507 agagaaatcattgttagaaaggttgagtgtttgaagatgaacaagattgaaaagggtactgttaggatgtagtttaccttgaaggccttcacagccaaga 42125606  T
Q  124 ttaaggccaatgacatgaccagatacggtgtcacacgtgacaccatgccatgagcagcaatcagtcccatttttccatgttgctgttttcataggagatt 223  Q
    || |||||||| || |||| ||  | ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||     
T  42125607 ttgaggccaatcacgtgacgagtgatggtatcacacgtgacaccattccatgagcagcaatcagtcccatttttccatgttgctgttttcagaagagatc 42125706  T
Q  224 caacacaag 232  Q
    || ||||||    
T  42125707 catcacaag 42125715  T

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Target: chr5; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 42130734 - 42130920
Alignment:
Q  26 agaaataattgttcgaaaggttgagcatttgaaggtgagcaagatggaaaagggtactattaggatggagtataccttgaaagccttcacagccaaggtt 125  Q
    |||||| |||||  |||||||||||  |||| || ||| ||||||| ||||||||||||||||||| || | |||||  || ||||||||||||||||||    
T  42130734 agaaatcattgtaagaaaggttgagtgtttggagatgaacaagatgaaaaagggtactattaggattgaatgtacctgtaaggccttcacagccaaggtt 42130833  T
Q  126 aaggccaatgacatgaccagatacggtgtcacacgtgacaccatgccatgagcagcaatcagtcccatttttccatgttgctgtttt 212  Q
     ||| |||| || |||||||| || |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  42130834 gaggtcaatcacgtgaccagagactgtgtcacacgtgacgccattccatgagcagcaatcagtcccatttttccatgttgctgtttt 42130920  T

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Target: chr5; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 24 - 212
Target Start/End: Complemental strand, 41711882 - 41711694
Alignment:
Q  24 agagaaataattgttcgaaaggttgagcatttgaaggtgagcaagatggaaaagggtactattaggatggagtataccttgaaagccttcacagccaagg 123  Q
    |||||||| |||||  |||||||||||  |||| || ||| ||||||||||||| ||| |||||||||||| ||||||||||| ||| ||||||||||||    
T  41711882 agagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatggaaaagagtattattaggatggaatataccttgaaggccatcacagccaagg 41711783  T
Q  124 ttaaggccaatgacatgaccagatacggtgtcacacgtgacaccatgccatgagcagcaatcagtcccatttttccatgttgctgtttt 212  Q
    || |||||||  ||  ||||| | ||||||||||| ||||||||  |||||||||| ||||||||| ||||||||||||||| ||||||    
T  41711782 ttgaggccaaccacgcgaccatagacggtgtcacatgtgacaccgggccatgagcaacaatcagtctcatttttccatgttgttgtttt 41711694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 65 - 289
Target Start/End: Original strand, 42118947 - 42119183
Alignment:
Q  65 caagatggaaaagggtactattaggatggagtataccttgaaagccttcacagccaaggttaaggccaatgacatgaccagatacggtgtcacacgtgac 164  Q
    ||||||||||||||||| | |||||||| | | ||||   || || || | |||||||||| || ||||| || |||||||| ||  || |||||| |||    
T  42118947 caagatggaaaagggtattgttaggatgtaatttaccagtaaggcgttaaaagccaaggttgagaccaatcacgtgaccagagactctgacacacgcgac 42119046  T
Q  165 accatgccatga---gcagcaatcagtcccatttttccatgttgctgttttcataggagatt---caacacaaggagta------tctatagtgaaggag 252  Q
    ||||||||||||   |||||||||||||||||||||||||||||| |||||  | |||| ||    || | ||  ||||      |||||||||||||||    
T  42119047 accatgccatgatgagcagcaatcagtcccatttttccatgttgcagttttactcggaggtttaaaaatataataagtaatatcttctatagtgaaggag 42119146  T
Q  253 gacttgaactgaagcaaagcaaagctctcatcatgat 289  Q
    |||||||||||||||| |||| |||||||||||||||    
T  42119147 gacttgaactgaagcagagcagagctctcatcatgat 42119183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 213
Target Start/End: Complemental strand, 41570110 - 41569923
Alignment:
Q  26 agaaataattgttcgaaaggttgagcatttgaaggtgagcaagatggaaaagggtactattaggatggagtataccttgaaagccttcacagccaaggtt 125  Q
    |||||| |||||  |||||||||||   ||| || ||||||||||| ||||| ||  | |||||||  | | ||||||||| || ||||||||||||||     
T  41570110 agaaatcattgtgagaaaggttgagtgattggagatgagcaagatgaaaaagagtgttgttaggataaattttaccttgaaggcattcacagccaaggtc 41570011  T
Q  126 aaggccaatgacatgaccagatacggtgtcacacgtgacaccatgccatgagcagcaatcagtcccatttttccatgttgctgttttc 213  Q
     || ||||| ||  ||||||| || | ||| |||||||||||||||||||| || ||||  ||| || |||||||||||| |||||||    
T  41570010 gagaccaatcacgcgaccagagacagcgtcgcacgtgacaccatgccatgaacaacaatttgtctcaattttccatgttgatgttttc 41569923  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 42125742 - 42125780
Alignment:
Q  256 ttgaactgaagcaaagcaaagctctcatcatgatgacat 294  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  42125742 ttgaactgaagcaaagcagagctctcatcatgatgacat 42125780  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 42130947 - 42130998
Alignment:
Q  239 ctatagtgaaggaggacttgaactgaagcaaagcaaagctctcatcatgatg 290  Q
    ||||| ||||||| ||||||||||||||||||||| |||| |||| ||||||    
T  42130947 ctataatgaaggatgacttgaactgaagcaaagcagagctgtcattatgatg 42130998  T

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Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 27 - 234
Target Start/End: Complemental strand, 25521115 - 25520908
Alignment:
Q  27 gaaataattgttcgaaaggttgagcatttgaaggtgagcaagatggaaaagggtactattaggatggagtataccttgaaagccttcacagccaaggtta 126  Q
    ||||| |||||  |||||||||||  ||||||  ||||||||||||||||| |||||||||||||||| ||||||||| | ||||||||||||||||||     
T  25521115 gaaatcattgtaagaaaggttgagtttttgaatatgagcaagatggaaaagagtactattaggatggaatataccttggaggccttcacagccaaggttg 25521016  T
Q  127 aggccaatgacatgaccagatacggtgtcacacgtgacaccatgccatgagcagcaatcagtcccatttttccatgttgctgttttcataggagattcaa 226  Q
    |||||||| ||  ||||| |   |||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||     
T  25521015 aggccaatcacgcgaccaaaagtggtgtcgcatgtgacaccatgccatgagcagcaatcagtcccatatttccatgttgctgttttcagaagagattcat 25520916  T
Q  227 cacaagga 234  Q
    ||||||||    
T  25520915 cacaagga 25520908  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 25520890 - 25520840
Alignment:
Q  240 tatagtgaaggaggacttgaactgaagcaaagcaaagctctcatcatgatg 290  Q
    ||||||||||||||| || |||||||||| |||| ||||||||||| ||||    
T  25520890 tatagtgaaggaggatttaaactgaagcagagcagagctctcatcacgatg 25520840  T

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Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 24 - 214
Target Start/End: Original strand, 8524962 - 8525152
Alignment:
Q  24 agagaaataattgttcgaaaggttgagcatttgaaggtgagcaagatggaaaagggtactattaggatggagtataccttgaaagccttcacagccaagg 123  Q
    |||||||| |||||| | |||||||||  ||||||  | ||||||||||||||||||||| ||||||| |||||| |||||||  |||||||||||||||    
T  8524962 agagaaatcattgttagcaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgagtatgccttgaagaccttcacagccaagg 8525061  T
Q  124 ttaaggccaatgacatgaccagatacggtgtcacacgtgacaccatgccatgagcagcaatcagtcccatttttccatgttgctgttttca 214  Q
    || |||||||| || ||||||   | |||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||    
T  8525062 ttgaggccaatcacgtgaccactgatggtgtcacacgtgacaccatcccatgagcagcaatcaatctcatttttccatgttgctgttttca 8525152  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 8525199 - 8525249
Alignment:
Q  240 tatagtgaaggaggacttgaactgaagcaaagcaaagctctcatcatgatg 290  Q
    |||||||||||| |||||||| |||||||||||| ||||||||| ||||||    
T  8525199 tatagtgaaggatgacttgaaatgaagcaaagcagagctctcataatgatg 8525249  T

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Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 42 - 210
Target Start/End: Original strand, 11120299 - 11120467
Alignment:
Q  42 aaggttgagcatttgaaggtgagcaagatggaaaagggtactattaggatggagtataccttgaaagccttcacagccaaggttaaggccaatgacatga 141  Q
    |||||||||  |||| || ||| |||||||||||||||||||||| ||||| | ||| |||||||  |||||||||||||| || |||||||| ||  ||    
T  11120299 aaggttgagtgtttggagatgaacaagatggaaaagggtactattcggatgtaatatgccttgaagaccttcacagccaagattgaggccaatcacgcga 11120398  T
Q  142 ccagatacggtgtcacacgtgacaccatgccatgagcagcaatcagtcccatttttccatgttgctgtt 210  Q
    ||||| | |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  11120399 ccagagatggtgtcgcacgtgacaccattccatgagcagcaatcagtcccatttttccatgttgttgtt 11120467  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 11120516 - 11120562
Alignment:
Q  244 gtgaaggaggacttgaactgaagcaaagcaaagctctcatcatgatg 290  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  11120516 gtgaaggaggactcgaactgaagcaaagcaaagctctcatcgtgatg 11120562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 12250344 - 12250516
Alignment:
Q  40 gaaaggttgagcatttgaaggtgagcaagatggaaaagggtactattaggatggagtataccttgaaagccttcacagccaaggttaaggccaatgacat 139  Q
    |||||||||||  |||| || |||||||||| |||||||||||||||||| || | |||||| | || |||||||  ||||||||  |||||||| ||||    
T  12250344 gaaaggttgagtgtttggagatgagcaagatcgaaaagggtactattaggttgtaatataccatcaaggccttcatcgccaaggtcgaggccaatcacat 12250443  T
Q  140 gaccagatacggtgtcacacgtgacaccatgccatgagcagcaatcagtcccatttttccatgttgctgtttt 212  Q
    ||||| | |  |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12250444 gaccatagattgtgtcacatgtgacaccatgccatgagcagcaatcagtcccattttgccatgttgctgtttt 12250516  T

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