View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4806_low_28 (Length: 273)
Name: NF4806_low_28
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806_low_28 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 8038884 - 8039129
Alignment:
| Q |
18 |
actccttcctttctctcataaccgtgtaagtgaaatcattgatgattttgatgcacttgtcaaa-gttgtatttttgaaccaagatttcaannnnnnnnn |
116 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | |
|
|
| T |
8038884 |
actcctttctttttctcataaccgtgtaagtgaaatcattgatgattttgatgcacttgtcaaaagttgtaattttgaaccaagatttcgaattttttt- |
8038982 |
T |
|
| Q |
117 |
aattttcacttaagggatcgatatagtgaagtgttaaaatgatatagaagtatacaaagcttgagcaaaggaattcttggtgagttaggattcaaagttc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8038983 |
aattttcacttaagggatcgatatagtgaagtgttaaaatgatatagaagtatacaaagcttgagcaaaggaattcttggtgagttaggattcaaagttc |
8039082 |
T |
|
| Q |
217 |
taatttctaatcaaaaaccaactttgcatttagattccactgtcatt |
263 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8039083 |
tactttctaatcaaaaaccaactttgcatttagattccactgtcatt |
8039129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 245
Target Start/End: Original strand, 8026803 - 8027023
Alignment:
| Q |
23 |
ttcctttctctcataaccgtgtaagtgaaatcattgatgattttgatgcacttgtcaaagttgtatttttgaaccaagatttcaannnnnnnnnaatttt |
122 |
Q |
| |
|
||||||| ||| ||||| | | |||||||||||| |||||||||||||| |||||||| || ||| |||| ||||||||||| | |||||| |
|
|
| T |
8026803 |
ttcctttttcttataactgagcaagtgaaatcatcgatgattttgatgctcttgtcaaggt-gtacttttaaaccaagattt-agaattttcttaatttt |
8026900 |
T |
|
| Q |
123 |
cacttaagggatcgatatagtgaagtgttaaaatgatatagaagtatacaaagcttgagcaaaggaattcttggtgagttaggattcaaagttctaattt |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8026901 |
cacttaagggatcgatatagtgaagtgttaaaatgatttagaagtatacacagcttgagcaaaggaattcttggtgagttaggattcaaagttctaattt |
8027000 |
T |
|
| Q |
223 |
ctaatcaaaaaccaactttgcat |
245 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
8027001 |
ttaatcaaaaaccaattttgcat |
8027023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 8016887 - 8017106
Alignment:
| Q |
21 |
ccttcctttctctcataaccgtgtaagtgaaatcattgatgattttgatgcacttgtcaaagttgtatttttgaaccaagatttcaannnnnnnnnaatt |
120 |
Q |
| |
|
||||||||| ||| ||||||| |||||||||||||| ||| |||||||||| ||||||||| ||||| |||||||||||||||| | |||| |
|
|
| T |
8016887 |
ccttcctttttcttataaccgagtaagtgaaatcatcgataattttgatgctcttgtcaaaattgtacttttgaaccaagattttgaattttctt-aatt |
8016985 |
T |
|
| Q |
121 |
ttcacttaagggatcgatatagtgaagtgttaaaatgatatagaagtatacaaagcttgagcaaaggaa-ttcttggtgagttaggattcaaagttctaa |
219 |
Q |
| |
|
||| |||||||| || || |||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
8016986 |
ttc-cttaaggggtcaatgaagtgaagtgttaaaatgatatagaagtataaaaagcttgagcaaaagaacttcttggtgagttaggattcaaagttctaa |
8017084 |
T |
|
| Q |
220 |
tttctaatcaaaaaccaactttg |
242 |
Q |
| |
|
|||||| || ||||||||||||| |
|
|
| T |
8017085 |
tttctactc-aaaaccaactttg |
8017106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 245
Target Start/End: Complemental strand, 7236051 - 7235931
Alignment:
| Q |
127 |
taagggatcgatatagtgaagtgttaaaatgatat-agaagtatacaaagcttgagcaaaggaattctt-ggtgagttaggattcaaagttctaatttct |
224 |
Q |
| |
|
||||||||| || || ||||||||| ||| |||| || ||||| |||||||||||||| ||||| || ||||||||||||||||| |||| |||||| |
|
|
| T |
7236051 |
taagggatcaatgaagcgaagtgttacaattatattagcagtatcaaaagcttgagcaaaagaattgtttggtgagttaggattcaatgttccaatttcc |
7235952 |
T |
|
| Q |
225 |
aatcaaaaaccaactttgcat |
245 |
Q |
| |
|
| || |||||||||||||||| |
|
|
| T |
7235951 |
actccaaaaccaactttgcat |
7235931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 49591908 - 49591982
Alignment:
| Q |
172 |
aaagcttgagcaaaggaattctt-ggtgagttaggattcaaagttctaatttctaatcaaaaaccaactttgcat |
245 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||||||||||| |||| |||||| | || |||||||||||||||| |
|
|
| T |
49591908 |
aaagcttgagcaaaagaattgtttggtgagttaggattcaatgttccaatttccactccaaaaccaactttgcat |
49591982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University