View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4806_low_3 (Length: 571)
Name: NF4806_low_3
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 121 - 334
Target Start/End: Original strand, 44404092 - 44404305
Alignment:
| Q |
121 |
ttaattgactccaccatgacttgtgattcacgacctggtctccctcccacaaagccgccgcacgctctcaggtcccacctttcacatatacttttccacc |
220 |
Q |
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| T |
44404092 |
ttaattgactccaccatgacttgtgattcacgacctggtctccctcccacaaagccaccccacgctcccaggtcccacctttcacatatacttttccacc |
44404191 |
T |
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| Q |
221 |
gttccttcgattgtctttttcgccgcccttccttccactttatatatttggaaacttcttttcctcaaaatactctttcttcctacgaaataaacattaa |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44404192 |
gttccttcgattgtctttttcgccgcccttccttccactttatatatttggaaacttcttttcctcaaaatactctttcttcctaagaaataaacattaa |
44404291 |
T |
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| Q |
321 |
aaccaaagttccag |
334 |
Q |
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||||||| |||||| |
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| T |
44404292 |
aaccaaaattccag |
44404305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 415 - 539
Target Start/End: Original strand, 44404367 - 44404491
Alignment:
| Q |
415 |
ttctactaccacgtggcaacaaaacataggttacatattaatgatgatttagttataatcatgcacctaaattatctccgtaatcatgcgtgacgcgtcc |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
44404367 |
ttctactaccacgtggcaacaaaacataggttacatattaatgatgatttagttataatcgtgcacctaaattatctccgtaattatgcgtgacgcgtcc |
44404466 |
T |
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| Q |
515 |
tcaattttctcaaccttatataatg |
539 |
Q |
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| T |
44404467 |
tcaattttctcaaccttatataatg |
44404491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 44403970 - 44404012
Alignment:
| Q |
18 |
gttgtaacaatgatgaacaagtttcgtggaagtatcttagact |
60 |
Q |
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| T |
44403970 |
gttgtaacaatgatgaacaagtttcgtggaagtatcttagact |
44404012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 44404021 - 44404067
Alignment:
| Q |
81 |
ccaagtcaaaaagcaagtctagattcagctcactcacttgttaattg |
127 |
Q |
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| T |
44404021 |
ccaagtcaaaaagcaagtccagattcagctcactcacttgttaattg |
44404067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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