View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4806_low_39 (Length: 221)

Name: NF4806_low_39
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4806_low_39
NF4806_low_39
[»] chr3 (24 HSPs)
chr3 (1-204)||(7333856-7334059)
chr3 (1-204)||(2643943-2644158)
chr3 (1-204)||(7318492-7318715)
chr3 (72-204)||(7442648-7442779)
chr3 (72-204)||(7324100-7324233)
chr3 (72-204)||(2476883-2477017)
chr3 (81-204)||(2492349-2492472)
chr3 (1-204)||(2635970-2636194)
chr3 (72-204)||(754278-754411)
chr3 (72-204)||(2631606-2631744)
chr3 (72-204)||(2658815-2658948)
chr3 (128-204)||(2502451-2502527)
chr3 (73-155)||(666829-666911)
chr3 (72-161)||(767939-768029)
chr3 (72-204)||(9565498-9565631)
chr3 (1-77)||(9594186-9594264)
chr3 (1-64)||(767850-767915)
chr3 (123-204)||(9561705-9561787)
chr3 (3-77)||(2477029-2477104)
chr3 (1-67)||(2631766-2631831)
chr3 (1-64)||(7442529-7442594)
chr3 (19-77)||(7423856-7423916)
chr3 (1-63)||(9565409-9565473)
chr3 (1-63)||(7324010-7324074)
[»] scaffold0097 (2 HSPs)
scaffold0097 (82-176)||(34243-34336)
scaffold0097 (1-39)||(34338-34376)
[»] chr5 (3 HSPs)
chr5 (125-204)||(20301686-20301766)
chr5 (125-204)||(20306099-20306179)
chr5 (125-204)||(20310503-20310583)
[»] chr7 (1 HSPs)
chr7 (124-204)||(39299228-39299309)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 7333856 - 7334059
Alignment:
Q  1 ttaaaatatagtgcaagatgtgagcgaatcaacaactcattaaccaaactattgaaaataaaaagcagtgttcaaccattgattaacaatgatctaacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7333856 ttaaaatatagtgcaagatgtgagcgaatcaacaactcattaaccaaactattgaaaataaaaagcagtgttcaaccattgattaacaatgatctaacaa 7333955  T
Q  101 gtcatgaataatcaaagcagggataaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatcccagcttagggcgatatcaaactct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7333956 gtcatgaataatcaaagcagggataaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatcccagcttagggcgatatcaaactct 7334055  T
Q  201 caat 204  Q
    ||||    
T  7334056 caat 7334059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 2643943 - 2644158
Alignment:
Q  1 ttaaaatatagtgcaagatgtgagcgaatcaacaactca--ttaaccaaactattgaaaataaaaagcagtgttcaaccatt--------gattaacaat 90  Q
    |||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||| || |||| |  |        |||||| |||    
T  2643943 ttaaaatatagtgcaagatgtgagagaatcaacaactcaaattaaccaaactattgaaaataaaaagcaatgatcaagctataactagtagattaataat 2644042  T
Q  91 gatctaacaagtcatgaataatcaaagcagggataaaata--aataacacaaataaaaactaaccatatatatgttgccgttgaatcccagcttagggcg 188  Q
    |||||||||||| || || ||| | |||||| |||| |||  ||||||||| | |||||||||||||||||||||||| |||||||||||||||| || |    
T  2644043 gatctaacaagtaatcaagaattagagcaggcataacatataaataacacagacaaaaactaaccatatatatgttgcagttgaatcccagcttaaggtg 2644142  T
Q  189 atatcaaactctcaat 204  Q
    ||||||||||||||||    
T  2644143 atatcaaactctcaat 2644158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 7318492 - 7318715
Alignment:
Q  1 ttaaaatatagtgcaagatgtgagcgaatcaacaactca-ttaaccaaactattgaaaataaaaagcagtgttcaa----------------ccattgat 83  Q
    |||||||||| || || ||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||                ||||||||    
T  7318492 ttaaaatataatggaatatgtgagagaatcaacaactcaattaaccaaactattgaaaataaaaagcaatgttcaagctatagctccattaaccattgat 7318591  T
Q  84 taacaatgatctaacaagtcatgaataatcaaagcagggataaaata--aataacacaaataaaa-actaaccatatatatgttgccgttgaatcccagc 180  Q
    ||| |||||||||||||||||| || ||||| |||||| |||| |||  ||||||||||| |||| |||||||||||||||||||| |||||||||||||    
T  7318592 taataatgatctaacaagtcatcaagaatcagagcaggcataacatataaataacacaaacaaaaaactaaccatatatatgttgcagttgaatcccagc 7318691  T
Q  181 ttagggcgatatcaaactctcaat 204  Q
    ||| || ||||| |||||||||||    
T  7318692 ttaaggtgatattaaactctcaat 7318715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 7442648 - 7442779
Alignment:
Q  72 tcaaccattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataaaa--actaaccatatatatgttgccgt 169  Q
    ||||||||||||||||||||||| |||||||||  || ||||| |   |   |||||||||||||||||||||||  |||||||||||||||||||||||    
T  7442648 tcaaccattgattaacaatgatccaacaagtcacaaaaaatcagatgtg---taaaataaataacacaaataaaaaaactaaccatatatatgttgccgt 7442744  T
Q  170 tgaatcccagcttagggcgatatcaaactctcaat 204  Q
    |||||||||||||||||||||||||||||||||||    
T  7442745 tgaatcccagcttagggcgatatcaaactctcaat 7442779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 7324100 - 7324233
Alignment:
Q  72 tcaaccatt-gattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataaaaactaaccatatatatgttgccgtt 170  Q
    ||||||||| |||||||||||||| |||||||||  || ||||| ||||||  ||||| ||| |||||||| |||||||||||||||||||||||| |||    
T  7324100 tcaaccattagattaacaatgatccaacaagtcaacaaaaatcagagcaggcgtaaaacaaacaacacaaacaaaaactaaccatatatatgttgcagtt 7324199  T
Q  171 gaatcccagcttagggcgatatcaaactctcaat 204  Q
    ||||||||||||| || |||||||||||||||||    
T  7324200 gaatcccagcttaaggtgatatcaaactctcaat 7324233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 2477017 - 2476883
Alignment:
Q  72 tcaaccattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataa--aaactaaccatatatatgttgccgt 169  Q
    ||||||||||||||||||||||| ||||| | |  || | |||||||||| ||||||||||||||||||  ||  |||||||||||||||||||||  ||    
T  2477017 tcaaccattgattaacaatgatccaacaaataaccaagactcaaagcaggcataaaataaataacacaacaaagaaaactaaccatatatatgttggagt 2476918  T
Q  170 tgaatcccagcttagggcgatatcaaactctcaat 204  Q
    |||||||||||||| || |||||||||||||||||    
T  2476917 tgaatcccagcttaaggtgatatcaaactctcaat 2476883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 81 - 204
Target Start/End: Complemental strand, 2492472 - 2492349
Alignment:
Q  81 gattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatcccagc 180  Q
    |||||||||||||| ||||||||| ||| ||||| |||| |  |||||||||||||||| | ||||||||||||||||||||  || |||||||||||||    
T  2492472 gattaacaatgatccaacaagtcaagaaaaatcagagcatgcgtaaaataaataacacacacaaaaactaaccatatatatgccgcagttgaatcccagc 2492373  T
Q  181 ttagggcgatatcaaactctcaat 204  Q
    ||| || |||||||||||||||||    
T  2492372 ttaaggtgatatcaaactctcaat 2492349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 2636194 - 2635970
Alignment:
Q  1 ttaaaatatagtgcaagatgtgagcgaatcaacaactc--attaaccaaactattgaaaataaaaagcagtgt-----------------tcaaccattg 81  Q
    |||||||||||||||||||||||| ||||||||||| |  ||||||||||||| ||||||||||||||| |||                 ||||||||||    
T  2636194 ttaaaatatagtgcaagatgtgagagaatcaacaacacaaattaaccaaactactgaaaataaaaagcaatgttcaacctatagattccatcaaccattg 2636095  T
Q  82 attaacaatgatctaacaagtcatgaataatcaaagcagggata--aaataaataacacaaataaaaactaaccatatatatgttgccgttgaatcccag 179  Q
    |||||||||||||||||||||||  || ||||| |  ||| |||  | |||||||||||| | |||||||||||||||||||||||| | |||||||||     
T  2636094 attaacaatgatctaacaagtcaccaagaatcagattaggcataatacataaataacacagacaaaaactaaccatatatatgttgcagatgaatcccaa 2635995  T
Q  180 cttagggcgatatcaaactctcaat 204  Q
    |||| || |||||||||||| ||||    
T  2635994 cttaaggtgatatcaaactcgcaat 2635970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 754278 - 754411
Alignment:
Q  72 tcaaccattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaa-ataaaaactaaccatatatatgttgccgtt 170  Q
    |||||||||||||| |||||||| ||||| |||  || ||||||| |||  |||||||||||||||||| | ||||||||||||| |||||||||| |||    
T  754278 tcaaccattgattagcaatgatccaacaaatcaccaagaatcaaatcagacataaaataaataacacaatacaaaaactaaccatgtatatgttgcagtt 754377  T
Q  171 gaatcccagcttagggcgatatcaaactctcaat 204  Q
    ||||||  ||||| || |||||||||||||||||    
T  754378 gaatccttgcttaaggtgatatcaaactctcaat 754411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 2631744 - 2631606
Alignment:
Q  72 tcaaccattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaa-----taacacaaata-aaaactaaccatatatatgttg 165  Q
    ||||||||||||||||||||||| |||||||||  || |||||||||||  ||||||||||     ||||| ||| | |||||||||||| |||||||||    
T  2631744 tcaaccattgattaacaatgatccaacaagtcactaagaatcaaagcagacataaaataaaataaataacataaacataaaactaaccatgtatatgttg 2631645  T
Q  166 ccgttgaatcccagcttagggcgatatcaaactctcaat 204  Q
    | |||||||||||||||| || ||||| |||||||||||    
T  2631644 cagttgaatcccagcttaaggtgatattaaactctcaat 2631606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 2658815 - 2658948
Alignment:
Q  72 tcaaccattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaata--aataacacaaataaaaactaaccatatatatgttgccgt 169  Q
    ||||||||| |||||||||||||||||||||||  || ||||| |||||| |||| |||  ||||||||||| |||||||||||||||||||||||| ||    
T  2658815 tcaaccattaattaacaatgatctaacaagtcaccaa-aatcagagcaggcataacatataaataacacaaacaaaaactaaccatatatatgttgcagt 2658913  T
Q  170 tgaatcccagcttagggcgatatcaaactctcaat 204  Q
    ||||||   ||||| || ||||| | |||||||||    
T  2658914 tgaatcaatgcttaaggtgatatgagactctcaat 2658948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 2502527 - 2502451
Alignment:
Q  128 ataaataacacaaataaaaactaaccatatatatgttgccgttgaatcccagcttagggcgatatcaaactctcaat 204  Q
    |||||||||| |||| ||||||||||||||||||||||| |||||||||  ||||| || |||||||||||||||||    
T  2502527 ataaataacagaaattaaaactaaccatatatatgttgcagttgaatccatgcttaaggtgatatcaaactctcaat 2502451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 666829 - 666911
Alignment:
Q  73 caaccattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataaaaactaaccat 155  Q
    |||||||||||||||||||||| |||||||||  || |||||||| | | ||||||||||| ||||||| |||||||||||||    
T  666829 caaccattgattaacaatgatccaacaagtcaccaagaatcaaaggaagcataaaataaattacacaaacaaaaactaaccat 666911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 767939 - 768029
Alignment:
Q  72 tcaaccattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacaca-aataaaaactaaccatatatat 161  Q
    ||||||||||||||||||||||| ||||| |||  || |||||||||||  ||||||||||||||||| |  |||||||||||||||||||    
T  767939 tcaaccattgattaacaatgatccaacaaatcaccaagaatcaaagcagatataaaataaataacacagacaaaaaactaaccatatatat 768029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 9565498 - 9565631
Alignment:
Q  72 tcaaccattgattaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacaca-aataaaaactaaccatatatatgttgccgtt 170  Q
    |||||||||||||| |||||||| ||||| |||  || ||||||| |||  |||||||||||||||||  | |||||||||||||||  |||||||  ||    
T  9565498 tcaaccattgattagcaatgatccaacaaatcaccaagaatcaaatcagacataaaataaataacacagtaaaaaaactaaccatatcaatgttgcattt 9565597  T
Q  171 gaatcccagcttagggcgatatcaaactctcaat 204  Q
    ||||||  || || || |||||||||||||||||    
T  9565598 gaatccgtgcctaaggtgatatcaaactctcaat 9565631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 9594186 - 9594264
Alignment:
Q  1 ttaaaatatagtgcaagatgtgagcgaatcaacaactc--attaaccaaactattgaaaataaaaagcagtgttcaacc 77  Q
    ||||||||||||||||||| || | |||||||||||||  ||||||||||||||||||||||| ||||| |||| ||||    
T  9594186 ttaaaatatagtgcaagatatgtgagaatcaacaactcaaattaaccaaactattgaaaataagaagcaatgttgaacc 9594264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 767850 - 767915
Alignment:
Q  1 ttaaaatatagtgcaagatgtgagcgaatcaacaactc--attaaccaaactattgaaaataaaaa 64  Q
    |||||||||||||||||||||||| |||| ||||||||  ||||||||||||||||||||| ||||    
T  767850 ttaaaatatagtgcaagatgtgagagaattaacaactcaaattaaccaaactattgaaaattaaaa 767915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 204
Target Start/End: Original strand, 9561705 - 9561787
Alignment:
Q  123 ataaaataaataacacaaataaaa-actaaccatatatatgttgccgttgaatcccagcttagggcgatatcaaactctcaat 204  Q
    |||||||||  |||||||| |||| |||||||||||||||||||| ||||||||   ||||| || |||||||||||||||||    
T  9561705 ataaaataatcaacacaaacaaaaaactaaccatatatatgttgcagttgaatcaatgcttaaggtgatatcaaactctcaat 9561787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 2477104 - 2477029
Alignment:
Q  3 aaaatatagtgcaagatgtgagcgaatcaacaactc--attaaccaaactattgaaaataaaaagcagtgttcaacc 77  Q
    |||| ||||||||| ||||||| |||||||||||||  | ||||||||||||||||||| ||||||| |||||||||    
T  2477104 aaaagatagtgcaaaatgtgagagaatcaacaactcaaactaaccaaactattgaaaat-aaaagcaatgttcaacc 2477029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 2631831 - 2631766
Alignment:
Q  1 ttaaaatatagtgcaagatgtgagcgaatcaacaactca--ttaaccaaactattgaaaataaaaagca 67  Q
    |||||||||||||||||||||||| | |   ||||||||  ||||||||||||||||||||||||||||    
T  2631831 ttaaaatatagtgcaagatgtgagagta---acaactcaaattaaccaaactattgaaaataaaaagca 2631766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 7442529 - 7442594
Alignment:
Q  1 ttaaaatatagtgcaagatgtgagcgaatcaacaactca--ttaaccaaactattgaaaataaaaa 64  Q
    |||||||||| ||||||||| |||  |||| ||||||||  |||||||||||||||||||||||||    
T  7442529 ttaaaatataatgcaagatgcgagaaaatctacaactcaaattaaccaaactattgaaaataaaaa 7442594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 7423856 - 7423916
Alignment:
Q  19 tgtgagcgaatcaacaactca--ttaaccaaactattgaaaataaaaagcagtgttcaacc 77  Q
    |||||| ||||||||||||||  ||||||||||||||||||||||||| || |||| ||||    
T  7423856 tgtgagagaatcaacaactcaaattaaccaaactattgaaaataaaaaccactgttgaacc 7423916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 9565409 - 9565473
Alignment:
Q  1 ttaaaatatagtgcaagatgtgagcgaatcaacaactc--attaaccaaactattgaaaataaaa 63  Q
    |||||||||| ||||||||  ||| |||||||||||||  |||||||| ||||||||||||||||    
T  9565409 ttaaaatataatgcaagattagagagaatcaacaactcaaattaaccatactattgaaaataaaa 9565473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 7324010 - 7324074
Alignment:
Q  1 ttaaaatatagtgcaagatgtgagcgaatcaacaactc--attaaccaaactattgaaaataaaa 63  Q
    |||||||||| ||||| ||||||| |||||||||||||  ||||| ||||||  |||||||||||    
T  7324010 ttaaaatataatgcaatatgtgagagaatcaacaactcaaattaatcaaactgatgaaaataaaa 7324074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 34336 - 34243
Alignment:
Q  82 attaacaatgatctaacaagtcatgaataatcaaagcagggataaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatcc 176  Q
    ||||||||||||| |||||||||  || ||||| |||||| |||| |||||||||||||| |||||||||||||||||||||||| |||||||||    
T  34336 attaacaatgatcaaacaagtcaccaa-aatcagagcaggcataacataaataacacaaacaaaaactaaccatatatatgttgcagttgaatcc 34243  T

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Target: scaffold0097; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 34376 - 34338
Alignment:
Q  1 ttaaaatatagtgcaagatgtgagcgaatcaacaactca 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  34376 ttaaaatatagtgcaagatgtgagagaatcaacaactca 34338  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 20301766 - 20301686
Alignment:
Q  125 aaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatccca-gcttagggcgatatcaaactctcaat 204  Q
    ||||||||||||||||| | ||||||||||||| |||||||| | ||| || || ||||| || ||||| |||||||||||    
T  20301766 aaaataaataacacaaacagaaactaaccatatctatgttgcagctgagtctcatgcttaaggtgatattaaactctcaat 20301686  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 20306179 - 20306099
Alignment:
Q  125 aaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatccca-gcttagggcgatatcaaactctcaat 204  Q
    ||||||||||||||||| | ||||||||||||| |||||||| | ||| || || ||||| || ||||| |||||||||||    
T  20306179 aaaataaataacacaaacagaaactaaccatatctatgttgcagctgagtctcatgcttaaggtgatattaaactctcaat 20306099  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 20310583 - 20310503
Alignment:
Q  125 aaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatccca-gcttagggcgatatcaaactctcaat 204  Q
    ||||||||||||||||| | ||||||||||||| |||||||| | ||| || || ||||| || ||||| |||||||||||    
T  20310583 aaaataaataacacaaacagaaactaaccatatctatgttgcagctgagtctcatgcttaaggtgatattaaactctcaat 20310503  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 204
Target Start/End: Complemental strand, 39299309 - 39299228
Alignment:
Q  124 taaaataaataacacaaataaaaactaaccatatatatgttgccgttgaatccca-gcttagggcgatatcaaactctcaat 204  Q
    |||||||||||||||||| ||||||||||||| || || |||  |||||||| || ||||| ||  ||||||| ||||||||    
T  39299309 taaaataaataacacaaacaaaaactaaccatgtagatcttgtagttgaatctcatgcttaaggtaatatcaagctctcaat 39299228  T

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