View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4806_low_4 (Length: 571)
Name: NF4806_low_4
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 510; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 18 - 547
Target Start/End: Original strand, 1462794 - 1463323
Alignment:
| Q |
18 |
ttaccatcacacaattctactatactatttttggtgcttttaaattcacaaaccaatatatgttaatatgaatgaataggtacatatatatcatggtctg |
117 |
Q |
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| T |
1462794 |
ttaccatcacacaattctactatactatttttggtgcttttaaattcacaaaccaatatatgttaatatgaatgaataggtacatatatatcatgctctg |
1462893 |
T |
|
| Q |
118 |
gctctcaacaatactatacttggtattggttttcttccctacactacagacaacatctgatggtgctaacttcatggaaaaatatcagaatatcatcgtg |
217 |
Q |
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| T |
1462894 |
gctctcaacaatactatacttggtattggttttcttccctacactacagacaacaactgatggtgctaacttcatggaaaaatatcagaatatcatcgtg |
1462993 |
T |
|
| Q |
218 |
ggctcgatcttctttattgttacctattttcaactagagttattttctactgtgacaagacactcttataaaagcatcatctttgggatcatattcataa |
317 |
Q |
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| T |
1462994 |
ggctcgatcttctttattgttacctattttcaactagagttattttctattgcgacaagacactcttttaaaagcatcatctttgggatcatattcataa |
1463093 |
T |
|
| Q |
318 |
ttatgatacaatatttcactccagttttagaacttagtcttttttcattcatgtattgcatcctttgggccctctcaattggtttgtttgtcatttctct |
417 |
Q |
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| T |
1463094 |
ttatgatacaatatttcactccagttttagaacttagtcttttttcattcatgtattgcatcctttgggccctctcaattggtttgtttgtcatttctct |
1463193 |
T |
|
| Q |
418 |
ctgtaaatggatccttttgtttgtcattgctctccgagaatggatctctagagtgaagatactgtattctcaaaggagagtttagaattttatttatctc |
517 |
Q |
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| T |
1463194 |
ctgtaaatggatccttttgtttgtcattgctctccgagaatggatctctagagtgaagatactgtattctcaaaggagagtttagaattttatttatctc |
1463293 |
T |
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| Q |
518 |
aataaaattggttgtgacataaatagttta |
547 |
Q |
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| T |
1463294 |
aataaaattggttgtgacataaatagttta |
1463323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 89 - 322
Target Start/End: Complemental strand, 1430205 - 1429972
Alignment:
| Q |
89 |
atgaataggtacatatatatcatggtctggctctcaacaatactatacttggtattggttttcttccctacactacagacaacatctgatggtgctaact |
188 |
Q |
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||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||| |||||||||| ||| |||||||||| ||||||| |||| |
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| T |
1430205 |
atgaataggtacataaattacatggcagtgctctcaacaatactatgcttggtattggttatcttccctaccctaaagacaacatcatatggtgcaaact |
1430106 |
T |
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| Q |
189 |
tcatggaaaaatatcagaatatcatcgtgggctcgatcttctttattgttacctattttcaactagagttattttctactgtgacaagacactcttataa |
288 |
Q |
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| T |
1430105 |
tcatggcaaaatatcagaatattctcatgcagtcgatcgtctatcttgttacctttattcaaataaagctattttctatcacgacaatgcacccttttca |
1430006 |
T |
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| Q |
289 |
aagcatcatctttgggatcatattcataattatg |
322 |
Q |
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|| || |||||||||||||||||||||||||||| |
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| T |
1430005 |
aaccagcatctttgggatcatattcataattatg |
1429972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 214
Target Start/End: Original strand, 1567258 - 1567352
Alignment:
| Q |
120 |
tctcaacaatactatacttggtattggttttcttccctacactacagacaacatctgatggtgctaacttcatggaaaaatatcagaatatcatc |
214 |
Q |
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|||| |||||||||| |||| |||||| | ||||||||| |||| ||| | |||| |||||| |||||| |||| ||||||| ||||||||||| |
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| T |
1567258 |
tctcgacaatactatgcttgctattggctatcttccctatactaaagatatcatcagatggtcgtaactttatggcaaaatatgagaatatcatc |
1567352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 214
Target Start/End: Complemental strand, 1456087 - 1455993
Alignment:
| Q |
120 |
tctcaacaatactatacttggtattggttttcttccctacactacagacaacatctgatggtgctaacttcatggaaaaatatcagaatatcatc |
214 |
Q |
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| T |
1456087 |
tctcgacaatactatgcttgctattggctatcttccctatgctaaagatatcatcagatggtcgtaactttatggcaaaatatgagaatatcatc |
1455993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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