View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4806_low_42 (Length: 206)
Name: NF4806_low_42
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 12640789 - 12640963
Alignment:
| Q |
19 |
catacacatttgtgaacccaacatattggattagtccaataaacaatgcagctgacatggattgtcttcaatggagcaacgaccaaacaacactttgtta |
118 |
Q |
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| T |
12640789 |
catacacatttgtgaacccaacatattggattagtccaataaacaatgcagctgacatggattgtcttcaatggagcaacgaccaaacaacactttgtta |
12640888 |
T |
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| Q |
119 |
caattgtgactcatgcaaggctggtttgttggcaaatcttaggaaggaatggaaaagagctaatgtgatattgat |
193 |
Q |
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| T |
12640889 |
caactgtgactcatgcaaggctggtttgttggcaaatcttaggaaggaatggaaaagagctaatgtgatattgat |
12640963 |
T |
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Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 27780233 - 27780402
Alignment:
| Q |
21 |
tacacatttgtgaacccaacatattggattagtccaataaacaatgcagctgacatggattgtcttcaatggagcaacgaccaaacaacactttgttaca |
120 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||| | ||||||||||| | |||||||||| || |||||| |||||| || | |
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| T |
27780233 |
tacacatttgtgaacccaacatattggattagcccaattaacacaaatgaagacatggattgcatgaaatggagcaatgaacaaacacaactttgctata |
27780332 |
T |
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| Q |
121 |
attgtgactcatgcaaggctggtttgttggcaaatcttaggaaggaatggaaaagagctaatgtgatatt |
190 |
Q |
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| T |
27780333 |
attgtgactcatgcaaagctggtttgttagcaactattaggatagaatggaggaaagccaatgtgatatt |
27780402 |
T |
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