View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4806_low_43 (Length: 201)
Name: NF4806_low_43
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 10244094 - 10243931
Alignment:
| Q |
19 |
acaaatgcaccattttctttcacattcttatcttggtaataggatttgtaaacaaaagactaaaatgaagattccaagaatatataatccttgctttgga |
118 |
Q |
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| T |
10244094 |
acaaatgcaccattttctttcacattcttatcttggtaataggatttgtaaacaaaagactaaaatgaagattccaagaatatataatccttgctttgga |
10243995 |
T |
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| Q |
119 |
aactttat-tatctcttatttaacttatttacttaaaaacatccgagagtcctatgggtggtga |
181 |
Q |
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| T |
10243994 |
aacattatatatctcttatttaacttatttacttaaaagcatccgagagtcctatgggtggtga |
10243931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 10218052 - 10217936
Alignment:
| Q |
25 |
gcaccattttctttcacattcttatcttggtaataggatttgtaaacaaaagactaaaatgaaga-ttccaagaatatataatccttgctttggaaactt |
123 |
Q |
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|||||||||||||||||| |||| |||||| ||||| ||||||||||| |||| | || |||||| |||||||||||||| |||||||||||||||| || |
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| T |
10218052 |
gcaccattttctttcacactcttgtcttggcaatagcatttgtaaacataagattgaattgaagatttccaagaatatatgatccttgctttggaaagtt |
10217953 |
T |
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| Q |
124 |
tat-tatctcttattta |
139 |
Q |
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||| ||||||||||||| |
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| T |
10217952 |
tatatatctcttattta |
10217936 |
T |
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