View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4806_low_5 (Length: 526)
Name: NF4806_low_5
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 2817717 - 2817483
Alignment:
| Q |
19 |
cacagaatcatcccacaagtctctctatcccttcactacttcttcttacggttcaagccttttctccattgttattttttattatcatcatttctttctt |
118 |
Q |
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| T |
2817717 |
cacagaatcatcccacaagtctctctatcccttcactacttctt---acggttcaagccttttctccattgttattttttattatcatcatttctttctt |
2817621 |
T |
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| Q |
119 |
gcttttactaatttcatgttcatggattctacatttttgtatacaatttnnnnnnnnnnnntatagtgtggcgacgagccgaattgatagagttttccta |
218 |
Q |
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| T |
2817620 |
gcttttactaatttcatgttcatggattctacatttttgtatacaatttcacacacacacatatagtgtggcgacgagccgaattgatagagttttccta |
2817521 |
T |
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| Q |
219 |
tcggaagagtgggtgaatatgtggggaagtctgtctct |
256 |
Q |
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| T |
2817520 |
tcggaagagtgggtgaatatgtggggaagtctgtctct |
2817483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 278 - 406
Target Start/End: Complemental strand, 2817451 - 2817323
Alignment:
| Q |
278 |
tgccctttgatcctaaaagttggcgaagcggattggggtcctaaacatttttgcttcaacaatcattggattgaattgaaaattggaaatctaaaaaggt |
377 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2817451 |
tgccctttgatcctaaaggttggcgaagcggattggagtcctaaacatttttgcttcaacaatcattggattgaattgaaaattggaaatctaaaaaggt |
2817352 |
T |
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| Q |
378 |
ggtggaggatgtttgatgtttattaaatc |
406 |
Q |
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| T |
2817351 |
ggtgtaggatgtttgatgtttattaaatc |
2817323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 409 - 508
Target Start/End: Complemental strand, 2816883 - 2816784
Alignment:
| Q |
409 |
agtgttccctgtaagaatctcttgatttcaaaaactatgaaccatctttcactcatctacttctcatttgtgaaaacaaaatttacgttttgtatgattt |
508 |
Q |
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| T |
2816883 |
agtgttccctgtaagaatctcttgatttcaaaaactatgaaccatctttcattcatctacttctcatttgtgaaaacaaaatttacgttttgtatgattt |
2816784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 455
Target Start/End: Original strand, 1423428 - 1423477
Alignment:
| Q |
406 |
ccaagtgttccctgtaagaatctcttgatttcaaaaactatgaaccatct |
455 |
Q |
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| T |
1423428 |
ccaagtgtttcctgtaagaatctcatcatttcaaaaactatgaaccatct |
1423477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 26477704 - 26477646
Alignment:
| Q |
198 |
cgaattgatagagttttcctatcggaagagtgggtgaatatgtggggaagtctgtctct |
256 |
Q |
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| T |
26477704 |
cgaattgatagggtgttcattttggacgagtgggtgaatatgtggggaagtctgtctct |
26477646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 24567600 - 24567646
Alignment:
| Q |
199 |
gaattgatagagttttcctatcggaagagtgggtgaatatgtgggga |
245 |
Q |
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|||||||||||||| | |||||||||||||||||||| |||||||| |
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| T |
24567600 |
gaattgatagagttgttgtatcggaagagtgggtgaatttgtgggga |
24567646 |
T |
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