View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4806_low_6 (Length: 455)

Name: NF4806_low_6
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4806_low_6
NF4806_low_6
[»] chr5 (14 HSPs)
chr5 (171-366)||(5048759-5048954)
chr5 (22-179)||(5048525-5048683)
chr5 (365-449)||(22512304-22512388)
chr5 (366-449)||(7617133-7617216)
chr5 (366-449)||(18033982-18034065)
chr5 (366-449)||(41334680-41334763)
chr5 (365-449)||(2614666-2614750)
chr5 (364-449)||(32473411-32473496)
chr5 (366-449)||(38470579-38470662)
chr5 (366-449)||(17208074-17208157)
chr5 (366-449)||(33801469-33801552)
chr5 (366-441)||(33855068-33855143)
chr5 (368-449)||(5256997-5257078)
chr5 (368-448)||(25915006-25915085)
[»] scaffold0119 (1 HSPs)
scaffold0119 (366-449)||(685-768)
[»] chr6 (18 HSPs)
chr6 (366-449)||(26670026-26670109)
chr6 (366-449)||(7273352-7273435)
chr6 (366-449)||(9698350-9698433)
chr6 (368-449)||(30735984-30736065)
chr6 (365-449)||(13743238-13743322)
chr6 (365-449)||(13748738-13748822)
chr6 (366-449)||(3213400-3213483)
chr6 (366-449)||(7292747-7292830)
chr6 (366-449)||(7367549-7367632)
chr6 (366-449)||(21293694-21293777)
chr6 (366-449)||(26466799-26466882)
chr6 (363-449)||(30014340-30014426)
chr6 (368-449)||(24204004-24204085)
chr6 (366-449)||(21279929-21280012)
chr6 (366-449)||(33242403-33242486)
chr6 (363-449)||(27441539-27441625)
chr6 (366-443)||(31109245-31109322)
chr6 (365-449)||(33253912-33253996)
[»] chr1 (22 HSPs)
chr1 (364-449)||(43571103-43571188)
chr1 (366-449)||(48498979-48499062)
chr1 (366-449)||(5489776-5489859)
chr1 (364-446)||(50448280-50448362)
chr1 (366-449)||(37814778-37814861)
chr1 (368-449)||(4401329-4401411)
chr1 (368-449)||(2497579-2497660)
chr1 (368-449)||(7447828-7447908)
chr1 (366-442)||(24769523-24769599)
chr1 (365-449)||(38335917-38336001)
chr1 (365-449)||(48119627-48119711)
chr1 (366-448)||(750323-750405)
chr1 (364-449)||(35003292-35003377)
chr1 (365-449)||(35000130-35000214)
chr1 (366-449)||(44112677-44112760)
chr1 (366-449)||(45705825-45705908)
chr1 (366-449)||(23989540-23989624)
chr1 (366-424)||(14427347-14427405)
chr1 (366-449)||(38113212-38113295)
chr1 (366-449)||(41065153-41065236)
chr1 (366-449)||(45639749-45639832)
chr1 (366-447)||(26585462-26585543)
[»] chr3 (24 HSPs)
chr3 (365-449)||(42100687-42100771)
chr3 (366-449)||(46941053-46941136)
chr3 (366-449)||(47191043-47191125)
chr3 (366-449)||(24688419-24688502)
chr3 (366-449)||(25413681-25413764)
chr3 (367-449)||(42394436-42394518)
chr3 (368-449)||(27748565-27748646)
chr3 (368-449)||(53581875-53581956)
chr3 (365-449)||(45126945-45127029)
chr3 (366-449)||(40808865-40808948)
chr3 (367-449)||(54237097-54237179)
chr3 (366-449)||(54246165-54246248)
chr3 (368-449)||(1078229-1078309)
chr3 (365-449)||(36150129-36150213)
chr3 (366-449)||(4190282-4190365)
chr3 (366-449)||(9434124-9434207)
chr3 (366-449)||(53273701-53273784)
chr3 (367-449)||(40480750-40480832)
chr3 (365-449)||(34791828-34791912)
chr3 (366-449)||(25996268-25996351)
chr3 (365-449)||(51757592-51757676)
chr3 (366-449)||(10457909-10457992)
chr3 (366-449)||(52627994-52628077)
chr3 (370-449)||(29558251-29558330)
[»] chr7 (26 HSPs)
chr7 (366-449)||(35069721-35069804)
chr7 (366-449)||(5015395-5015478)
chr7 (366-449)||(42972852-42972935)
chr7 (368-449)||(4638216-4638297)
chr7 (364-449)||(5810941-5811026)
chr7 (364-449)||(42538448-42538533)
chr7 (365-449)||(24001029-24001113)
chr7 (366-449)||(5194248-5194331)
chr7 (368-449)||(44326180-44326261)
chr7 (368-449)||(43343641-43343722)
chr7 (368-449)||(44416951-44417032)
chr7 (366-449)||(43317443-43317526)
chr7 (365-449)||(45326019-45326103)
chr7 (367-449)||(31408650-31408732)
chr7 (368-449)||(10573751-10573832)
chr7 (369-446)||(26898422-26898499)
chr7 (364-449)||(31513285-31513370)
chr7 (389-449)||(38160596-38160656)
chr7 (366-449)||(9216302-9216384)
chr7 (366-449)||(27535248-27535331)
chr7 (366-449)||(40236919-40237002)
chr7 (366-449)||(41861674-41861759)
chr7 (368-449)||(16180374-16180454)
chr7 (375-446)||(32029837-32029908)
chr7 (363-433)||(39998405-39998475)
chr7 (366-399)||(38160661-38160694)
[»] chr8 (23 HSPs)
chr8 (365-449)||(29705361-29705445)
chr8 (368-449)||(42295197-42295278)
chr8 (368-449)||(42699259-42699340)
chr8 (366-449)||(2546996-2547079)
chr8 (368-449)||(30912579-30912660)
chr8 (365-449)||(11582765-11582849)
chr8 (366-449)||(36743500-36743583)
chr8 (368-449)||(20148762-20148843)
chr8 (368-449)||(26125637-26125718)
chr8 (374-449)||(31384672-31384747)
chr8 (368-449)||(29800967-29801048)
chr8 (366-446)||(30660762-30660842)
chr8 (366-449)||(5754903-5754986)
chr8 (366-449)||(42197452-42197535)
chr8 (366-448)||(2165981-2166063)
chr8 (367-449)||(45397317-45397399)
chr8 (366-449)||(18066735-18066818)
chr8 (366-449)||(35181516-35181599)
chr8 (364-449)||(1375540-1375625)
chr8 (366-449)||(34304788-34304871)
chr8 (368-449)||(33630010-33630091)
chr8 (366-449)||(16603643-16603726)
chr8 (365-400)||(28977145-28977180)
[»] chr4 (33 HSPs)
chr4 (366-446)||(27550309-27550389)
chr4 (366-449)||(1771283-1771366)
chr4 (368-449)||(43514703-43514784)
chr4 (365-448)||(27316731-27316814)
chr4 (366-449)||(33703141-33703224)
chr4 (366-449)||(48463467-48463550)
chr4 (364-446)||(12496954-12497036)
chr4 (366-448)||(28988473-28988555)
chr4 (368-449)||(39631102-39631184)
chr4 (367-449)||(41878407-41878489)
chr4 (365-449)||(35017732-35017815)
chr4 (366-449)||(25051693-25051776)
chr4 (366-449)||(27864564-27864647)
chr4 (366-449)||(55966363-55966446)
chr4 (368-449)||(43949818-43949900)
chr4 (363-449)||(55272393-55272479)
chr4 (366-449)||(28982839-28982922)
chr4 (368-449)||(27893859-27893940)
chr4 (365-449)||(17619169-17619253)
chr4 (366-449)||(711960-712043)
chr4 (368-449)||(31680904-31680985)
chr4 (368-449)||(35037007-35037088)
chr4 (368-449)||(43735744-43735825)
chr4 (366-449)||(23035980-23036063)
chr4 (366-448)||(21687006-21687088)
chr4 (368-433)||(3756279-3756344)
chr4 (366-446)||(960890-960970)
chr4 (369-449)||(23204795-23204875)
chr4 (365-449)||(45490330-45490414)
chr4 (366-449)||(32728357-32728440)
chr4 (366-413)||(46827759-46827806)
chr4 (368-449)||(41327560-41327641)
chr4 (366-446)||(49229684-49229764)
[»] scaffold0038 (1 HSPs)
scaffold0038 (367-449)||(112656-112738)
[»] chr2 (25 HSPs)
chr2 (367-449)||(19047158-19047240)
chr2 (365-449)||(1750413-1750497)
chr2 (366-449)||(30838632-30838715)
chr2 (365-449)||(16096746-16096830)
chr2 (366-449)||(12302270-12302353)
chr2 (366-449)||(43335780-43335863)
chr2 (368-445)||(33229303-33229381)
chr2 (368-448)||(43490419-43490499)
chr2 (368-449)||(41281991-41282072)
chr2 (365-449)||(12415477-12415561)
chr2 (365-449)||(12427537-12427621)
chr2 (365-449)||(13780752-13780836)
chr2 (366-449)||(4764743-4764826)
chr2 (366-449)||(16803968-16804051)
chr2 (366-449)||(16843250-16843333)
chr2 (366-449)||(18491705-18491788)
chr2 (366-449)||(43114557-43114640)
chr2 (367-449)||(34817793-34817875)
chr2 (368-449)||(11825671-11825752)
chr2 (368-449)||(6518486-6518566)
chr2 (408-449)||(42849875-42849916)
chr2 (366-449)||(966851-966934)
chr2 (365-400)||(42849912-42849947)
chr2 (368-413)||(8896636-8896681)
chr2 (365-393)||(42849966-42849994)
[»] scaffold0157 (1 HSPs)
scaffold0157 (364-446)||(23441-23523)
[»] scaffold0385 (1 HSPs)
scaffold0385 (366-449)||(11251-11334)
[»] scaffold0187 (2 HSPs)
scaffold0187 (366-449)||(14205-14288)
scaffold0187 (366-449)||(24533-24616)
[»] scaffold0003 (1 HSPs)
scaffold0003 (363-449)||(45736-45822)
[»] scaffold0100 (1 HSPs)
scaffold0100 (364-449)||(35473-35558)


Alignment Details
Target: chr5 (Bit Score: 151; Significance: 1e-79; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 171 - 366
Target Start/End: Original strand, 5048759 - 5048954
Alignment:
Q  171 aaaaatgttaaaccggttgtaccaaactaacttgttttgcatcgatttggtttgatttgggtgtgacgagggcctttggtactaatagatatctgggatt 270  Q
    |||||| |||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5048759 aaaaatattaacccggttgtaccaaactaacttattttgcatcgacttggtttgatttgggtgtgacgagggcctttggtactaatagatatctgggatt 5048858  T
Q  271 tccttcattagttggaagatagacaaatattgtctcacnnnnnnnaccaatagagtttagaaggaaattaattccttaaagtggcaattctcattg 366  Q
    |||||||||||||||||||||||||||||||||||||        || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5048859 tccttcattagttggaagatagacaaatattgtctcaatttttttactaatagagtttagaaggaaattaattccttaaagtggcaattctcattg 5048954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 22 - 179
Target Start/End: Original strand, 5048525 - 5048683
Alignment:
Q  22 tgagttctatgttattccacaatccacattttaatat-ttgtatttatgtattattacgtacttgtttgaatagtgtaaaaaagctacggtgtttggtaa 120  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5048525 tgagttctatgttattccacaatccacattttaatatgttgtatttatgtattattacgtacttgtttgaatagtgtaaaaaagctacggtgtttggtga 5048624  T
Q  121 aacataannnnnnngaaattatattttataaaattaatttcgtaatgtttaaaaatgtt 179  Q
    |||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  5048625 aacataatttttttgaaattatattttataaaattaatttcgtaatgtttaaaaatgtt 5048683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 365 - 449
Target Start/End: Original strand, 22512304 - 22512388
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||  ||||||||| |||||||||| ||||||||||||||    
T  22512304 tggaaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaagttcatctcac 22512388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 7617133 - 7617216
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||| |||||| |||| |||||| ||||||||| |||||||||| ||||||||||||||    
T  7617133 ggaaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaagttcatctcac 7617216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 18033982 - 18034065
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||  |||||||| |||||||||  ||||||||||||||    
T  18033982 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaagttcatctcac 18034065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 41334763 - 41334680
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||| ||||| ||||| ||||||  |||||||| |||||||||| ||||||||||||||    
T  41334763 ggaaaatgttacatgaacaccctttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcac 41334680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 365 - 449
Target Start/End: Complemental strand, 2614750 - 2614666
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||||||| ||||   |||||||||||  |||||||| |||||||||| ||||||||||||||    
T  2614750 tggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 2614666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 364 - 449
Target Start/End: Complemental strand, 32473496 - 32473411
Alignment:
Q  364 ttggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||||| || ||||| | |||||||||| |||| |||| |||||||||| ||| ||||||||||    
T  32473496 ttggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggtaatttcatctcac 32473411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 38470579 - 38470662
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||| |||||||||||||| |||| | ||||||||||| ||||||||| |||||||||| ||| ||||| ||||    
T  38470579 ggaaaatgttacataaacaccctttattcatacattccattgtacaccccatgtattaaggatattttggtaaattcatttcac 38470662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 17208074 - 17208157
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||| ||||||||||||| || ||||||| |||||||||| |||| |||| ||| |||||| ||| ||||||||||    
T  17208074 ggaaaatgttacgtgaacaccctttaatcatacactttattgtacaccccatgcattaaggacattttggtaaattcatctcac 17208157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 33801469 - 33801552
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||| ||||||||  |||||  ||||||||||  ||||||||| |||||||||  ||||||||||||||    
T  33801469 ggaaaatgttacatgaacatcctttatttctacaccccattgtacactccatgtattagggatattttagtaagttcatctcac 33801552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 366 - 441
Target Start/End: Complemental strand, 33855143 - 33855068
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagtt 441  Q
    ||||||||||||||||||||||||||||| |||||  ||||||||||| ||||||||| | | |||||| ||||||    
T  33855143 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattaggaacattttggtaagtt 33855068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 449
Target Start/End: Original strand, 5256997 - 5257078
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||| |||||| ||||||| ||||   ||||||||||| ||||||||| |||||||||| ||| ||||||||||    
T  5256997 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcac 5257078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 368 - 448
Target Start/End: Complemental strand, 25915085 - 25915006
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctca 448  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||  |||||||| | |||||||  || ||||||||||    
T  25915085 aaaatgttacatgaacaccctttattcctacacctcattgtacacccaatgtatta-gaatatttttgtaggttcatctca 25915006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 685 - 768
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||| ||||||||||||||    
T  685 ggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcac 768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 26670109 - 26670026
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||| ||||||||||||||    
T  26670109 ggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcac 26670026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 7273435 - 7273352
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||| ||||| | |||||||||| |||||||||  ||||||||| ||||||||||||||    
T  7273435 ggaaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaagttcatctcac 7273352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 9698433 - 9698350
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||| ||||   |||||||||||  |||||||| |||||||||| ||||||||||||||    
T  9698433 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 9698350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 368 - 449
Target Start/End: Original strand, 30735984 - 30736065
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||  ||||||| |||||  |||||||||||||||||||||  ||||||||| ||||||||||||||    
T  30735984 aaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtattagtgatattttggtaagttcatctcac 30736065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 365 - 449
Target Start/End: Complemental strand, 13743322 - 13743238
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||| ||||||| ||||    |||||||||| ||||||||| |||||||||| ||||||||||||||    
T  13743322 tggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcac 13743238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 365 - 449
Target Start/End: Complemental strand, 13748822 - 13748738
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||| ||||||| ||||    |||||||||| ||||||||| |||||||||| ||||||||||||||    
T  13748822 tggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcac 13748738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 3213400 - 3213483
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||| |||||||||||||| ||||  |||||||||||| ||||||||| |||||||||| ||| ||||| ||||    
T  3213400 ggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcac 3213483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 7292747 - 7292830
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||| ||||||| ||||||| ||||| ||||| ||||||  |||||||| |||||||||| ||||||||||||||    
T  7292747 ggaaaatgttacaagaacaccatttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcac 7292830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 7367549 - 7367632
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||| ||||||| | ||||||| ||||| |||||||||| | ||||||||| |||||||||| ||||||||||||||    
T  7367549 ggaaaatgttatatgaacatcatttattcatacacctcattgtacatcccatgtattagggatattttggtaagttcatctcac 7367632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 21293777 - 21293694
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||| |||||||||||||| |||| |||| |||||||| ||||||||| |||||||||| ||| ||||| ||||    
T  21293777 ggaaaatgttacataaacaccctttattcatacatttcactgtacaccccatgtattaaggatattttggtaaattcatttcac 21293694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 26466799 - 26466882
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||| |||||||||||||| |||||  ||||||||||  ||||||||| || ||||||| ||||||||||||||    
T  26466799 ggaaaatgttacataaacaccctttattcctacaccccattgtacactccatgtattagggttattttggtaagttcatctcac 26466882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 363 - 449
Target Start/End: Original strand, 30014340 - 30014426
Alignment:
Q  363 attggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||||||||| ||||   |||| |||| | ||||||||| | |||||||| ||||||||||||||    
T  30014340 attggaaaatgttacatgaacaccctttattcctacatcccattatacatcccatgtattaggcatattttggtaagttcatctcac 30014426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 24204085 - 24204004
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||| ||||||| |||||   |||||||||  ||||||||| |||||||||| ||||||||||||||    
T  24204085 aaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaagttcatctcac 24204004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 21279929 - 21280012
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||  |||| | ||||| ||| | ||||||||| |||||||||| ||| ||||||||||    
T  21279929 ggaaaatgttacatgaacaccctttatttctacattccattgcacatcccatgtattagggatattttggtaaattcatctcac 21280012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 33242403 - 33242486
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||| |||| || ||||| | |||||||||| ||||||||| ||| |||||| ||| ||||||||||    
T  33242403 ggaaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtattaaggacattttggtaaattcatctcac 33242486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 363 - 449
Target Start/End: Original strand, 27441539 - 27441625
Alignment:
Q  363 attggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||| |||||||||||||||||||||||| || |||||   |||||||| |  |||||||| |||||||||| ||| ||||||||||    
T  27441539 attgaaaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcac 27441625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 443
Target Start/End: Complemental strand, 31109322 - 31109245
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttca 443  Q
    |||||||||||||||||||||||||| || ||||   |||| |||||| |||| | || |||||||||||||| ||||    
T  31109322 ggaaaatgttacatgaacaccctttaatcatacatcccattatacaccccatgcactagggatattttgataaattca 31109245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 449
Target Start/End: Original strand, 33253912 - 33253996
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||| |||| ||  ||||   |||||||||| |||| |||| ||| || ||| ||| ||||||||||    
T  33253912 tggaaaatgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcac 33253996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 364 - 449
Target Start/End: Complemental strand, 43571188 - 43571103
Alignment:
Q  364 ttggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  43571188 ttggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcac 43571103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 48499062 - 48498979
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||| |||||||  |||||| ||||||||||||||||||||| |||||||||| ||||||||||||||    
T  48499062 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcac 48498979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 5489776 - 5489859
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||| ||||   |||||||||||  |||||||| |||||||||| ||||||||||||||    
T  5489776 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 5489859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 364 - 446
Target Start/End: Complemental strand, 50448362 - 50448280
Alignment:
Q  364 ttggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatct 446  Q
    |||||||||||||||||||||| |||||||  |||||| |||||||||||| |||||||| |||||||||  |||||||||||    
T  50448362 ttggaaaatgttacatgaacactctttatttctacactccattgtacaccttatgtattagggatatttttgtaagttcatct 50448280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 37814778 - 37814861
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||| |||||||||||||| ||||  |||||||||||| ||||||||| |||||||||| ||| ||||| ||||    
T  37814778 ggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcac 37814861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 368 - 449
Target Start/End: Original strand, 4401329 - 4401411
Alignment:
Q  368 aaaatgttacatgaacacccttt-attcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||| ||||||||||| |||| |||| |||||||||||||||||| |||||||||  ||||||||| ||||||||||||||    
T  4401329 aaaatgatacatgaacactcttttattcctacacttcattgtacaccccatgtattagagatattttggtaagttcatctcac 4401411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 2497660 - 2497579
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||| |||||| ||||||| |||| | ||||||||||| ||| ||||| |||||||||| ||||||||||||||    
T  2497660 aaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaagttcatctcac 2497579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 449
Target Start/End: Original strand, 7447828 - 7447908
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||| ||||||||| ||||   ||||||||||| |||||||||  ||||||||||||||||||||||||    
T  7447828 aaaatgttacatgaacatcctttattcctacatcccattgtacacc-catgtattacagatattttgataagttcatctcac 7447908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 24769599 - 24769523
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttc 442  Q
    |||||||||| |||||||||| ||||||  |||||| ||||||||||| ||||||||| |||||||||| |||||||    
T  24769599 ggaaaatgtttcatgaacaccttttatttctacactccattgtacaccccatgtattagggatattttggtaagttc 24769523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 449
Target Start/End: Original strand, 38335917 - 38336001
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||| || ||||| | |||||||| | |||| |||| |||||||||| ||| ||||||||||    
T  38335917 tggaaaatgttacatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggtaaattcatctcac 38336001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 449
Target Start/End: Original strand, 48119627 - 48119711
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||| || |||||   |||||||||| |||| |||| |||||||||| ||| ||||||||||    
T  48119627 tggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcac 48119711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 366 - 448
Target Start/End: Complemental strand, 750405 - 750323
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctca 448  Q
    |||||||||||| |||||||||||  ||| |||||  ||||||||||| ||||||| | |||||||||||||| |||||||||    
T  750405 ggaaaatgttacgtgaacacccttatttcctacaccccattgtacaccccatgtatcagggatattttgataaattcatctca 750323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 449
Target Start/End: Original strand, 35003292 - 35003377
Alignment:
Q  364 ttggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||||| || |||||   |||||||||| |||  |||| |||||||||| ||| ||||||||||    
T  35003292 ttggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggtaaattcatctcac 35003377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 365 - 449
Target Start/End: Complemental strand, 35000214 - 35000130
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||| |||| || ||||||  |||||| || |||||||||| ||| |||||||||| || |||||||    
T  35000214 tggaaaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattagggacattttgataaatttatctcac 35000130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 44112677 - 44112760
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||| || |||||   |||||||||| |||| |||| ||| |||||| ||| ||||||||||    
T  44112677 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcac 44112760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 45705825 - 45705908
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||| |||||||||||||| || |||| |  |||||||||  |||| |||||||| |||||||||| ||||||||||    
T  45705825 ggaaaatgttatatgaacaccctttaatcatacattctattgtacactccatgcattatggacattttgataaattcatctcac 45705908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 23989624 - 23989540
Alignment:
Q  366 ggaaaatgttacatgaacaccc-tttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||| ||||||| ||||||  |||||| |||  |||||||| |||||||||| ||| || |||||||    
T  23989624 ggaaaatgttacatgaacacccttttattcatacactcaattgtataccctatgtattagggatattttggtaaatttatctcac 23989540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 424
Target Start/End: Original strand, 14427347 - 14427405
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattat 424  Q
    |||||||||||||||||||||||||| || |||||   ||||||||||||||| |||||    
T  14427347 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcattat 14427405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 38113295 - 38113212
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||| |||||||||||||| || |||||   |||||||||| |||| ||||  || |||||| ||| ||||||||||    
T  38113295 ggaaaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcattaatgacattttggtaaattcatctcac 38113212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 41065153 - 41065236
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||| || |||||    ||||||||| |||| |||| ||  |||||| ||| ||||||||||    
T  41065153 ggaaaatgttacatgaacaccctttaatcatacaccctgttgtacaccccatgcattaggggcattttggtaatttcatctcac 41065236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 45639832 - 45639749
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||| ||||| || ||||    |||||||||| |||  |||| |||||||||| ||| ||||||||||    
T  45639832 ggaaaatgttacatgaacactctttaatcatacatcctattgtacaccccatacattaaggatattttggtaaattcatctcac 45639749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 447
Target Start/End: Original strand, 26585462 - 26585543
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctc 447  Q
    ||||||||||| |||||||  ||||| || ||||||  |||||||||| |||| |||| |||||||||  ||| ||||||||    
T  26585462 ggaaaatgttagatgaacattctttaatcatacactatattgtacaccccatgcattaaggatattttagtaaattcatctc 26585543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 365 - 449
Target Start/End: Original strand, 42100687 - 42100771
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  42100687 tggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcac 42100771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 46941053 - 46941136
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||| ||||  |||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  46941053 ggaaaatgttacatgaacaccctttattcctacatctcattgtacaccccatgtattagggatattttggtaagttcatctcac 46941136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 47191125 - 47191043
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||||||    
T  47191125 ggaaaatgttacatgaacaccctttattcctacacctcattgtacacc-catgtattagagatattttgataagttcatctcac 47191043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 24688502 - 24688419
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||  |||||| |||||||||||  |||||||| |||||||||| ||||||||||||||    
T  24688502 ggaaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggtaagttcatctcac 24688419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 25413681 - 25413764
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||| |||||  |||||||||||| |||||||| |||||||||  ||||||||||||||    
T  25413681 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttttgtaagttcatctcac 25413764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 367 - 449
Target Start/End: Complemental strand, 42394518 - 42394436
Alignment:
Q  367 gaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||||| |||| | |||||||||||  |||||||| |||||||||| ||||||||||||||    
T  42394518 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcac 42394436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 368 - 449
Target Start/End: Original strand, 27748565 - 27748646
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||| ||||||| ||||| ||||| ||||||| |||||||| |||||||||| ||||||||||||||    
T  27748565 aaaatgttacatgaacaccttttattcatacacctcattatacaccttatgtattagggatattttggtaagttcatctcac 27748646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 53581956 - 53581875
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||| |||||||| |||||| ||||||||| |  |||||||| |||||||||||||||||||||||||    
T  53581956 aaaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagggatattttgataagttcatctcac 53581875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 365 - 449
Target Start/End: Complemental strand, 45127029 - 45126945
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||| |||||||||||||| ||||   ||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  45127029 tggaaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcac 45126945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 40808865 - 40808948
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||| |||||| ||||||| |||||  ||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  40808865 ggaaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaagttcatctcac 40808948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 367 - 449
Target Start/End: Original strand, 54237097 - 54237179
Alignment:
Q  367 gaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||||| ||||   |||||||||||  |||||||| |||||||||| ||||||||||||||    
T  54237097 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 54237179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 54246248 - 54246165
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||| |||||  |||||||||||  ||||||||  ||||||||  ||||||||||||||    
T  54246248 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttttgtaagttcatctcac 54246165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 449
Target Start/End: Original strand, 1078229 - 1078309
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||| | ||| ||||||||||||| |||||||| |||||||||  || |||||||||||    
T  1078229 aaaatgttacatgaacaccctttattcctgcacctcattgtacacctaatgtatta-ggatatttttgtaggttcatctcac 1078309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 449
Target Start/End: Original strand, 36150129 - 36150213
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||| ||||||||||| |||||  |||| ||||||  |||||| | |||||||||| ||||||||||||||    
T  36150129 tggaaaatgttacatgaataccctttattcatacaccccattatacaccctatgtatcagggatattttggtaagttcatctcac 36150213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 4190365 - 4190282
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||| || |||||   ||||||||||| ||||||||  ||||||||| ||| ||||||||||    
T  4190365 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaaattcatctcac 4190282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 9434124 - 9434207
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||| || ||||||  |||||||||| |||| |||| ||| |||||| ||| ||||||||||    
T  9434124 ggaaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcac 9434207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 53273784 - 53273701
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||| ||||||| | ||||||| || || |||||||||| | ||||||||| |||||||||| ||||||||||||||    
T  53273784 ggaaaatgttatatgaacatcatttattcctatacctcattgtacatcccatgtattagggatattttggtaagttcatctcac 53273701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 367 - 449
Target Start/End: Original strand, 40480750 - 40480832
Alignment:
Q  367 gaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||||| ||  |  ||||||||| |  |||||||| |||||||||| ||||||||||||||    
T  40480750 gaaaatgttacatgaacaccctttattcatatgccccattgtacatcctatgtattagggatattttggtaagttcatctcac 40480832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 365 - 449
Target Start/End: Original strand, 34791828 - 34791912
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||| || |||||   |||||| |||||||| |||| ||| ||||| |||| ||||||||||    
T  34791828 tggaaaatgttacatgaacaccctttaatcatacaccatattgtaaacctcatgcattagggacattttaataatttcatctcac 34791912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 25996268 - 25996351
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||| || ||||  | |||||||||| ||| ||||| ||| |||||| ||| ||||||||||    
T  25996268 ggaaaatgttacatgaacaccctttaatcatacatcttattgtacaccccatatattaaggacattttggtaaattcatctcac 25996351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 449
Target Start/End: Original strand, 51757592 - 51757676
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||| |||||| ||||||||||| || |||||   ||||||||||||||| |||||||| |||||  ||| ||||||||||    
T  51757592 tggaaaatattacataaacaccctttaatcatacaccctattgtacacctcatgcattatggacattttagtaatttcatctcac 51757676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 10457992 - 10457909
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||| |||| || |||||   |||||||||| |||| |||| |||||||||| ||| || |||||||    
T  10457992 ggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaatttatctcac 10457909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 52628077 - 52627994
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||| ||||||||||||| || ||||    ||||||||||||||| |||| | |||||||| ||| ||||||||||    
T  52628077 ggaaaatgttacgtgaacaccctttaatcatacatcctattgtacacctcatgcattaagtatattttggtaaattcatctcac 52627994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 449
Target Start/End: Complemental strand, 29558330 - 29558251
Alignment:
Q  370 aatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||| ||||||||||||||||| ||||  ||||||||||||  || ||||| | |||| ||| ||| ||||||||||    
T  29558330 aatgttatatgaacaccctttattcatacatctcattgtacaccctatatattaggaatatattggtaaattcatctcac 29558251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 35069721 - 35069804
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||| |||||||||| ||||||||||||||    
T  35069721 ggaaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcac 35069804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 5015395 - 5015478
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||| |||||||  |||||| ||||||||||||||||||||| |||||||||| ||||||||||||||    
T  5015395 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcac 5015478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 42972852 - 42972935
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||| |||||| ||||||||| |||||| ||||||||||||||||||||| |||||||||| ||||||||||||||    
T  42972852 ggaaaatgttacctgaacatcctttattcctacactccattgtacacctcatgtattagggatattttggtaagttcatctcac 42972935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 4638297 - 4638216
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||| ||||||| ||||||  |||||||||| ||| |||||||||||||||| ||||||||||||||    
T  4638297 aaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaagttcatctcac 4638216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 364 - 449
Target Start/End: Complemental strand, 5811026 - 5810941
Alignment:
Q  364 ttggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||| |||||||||||| |||||  |||||||||||  || ||||| |||||||||||||||||||||||||    
T  5811026 ttggaaaatgttacatgaccaccctttattcctacaccccattgtacaccctatatattagggatattttgataagttcatctcac 5810941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 364 - 449
Target Start/End: Complemental strand, 42538533 - 42538448
Alignment:
Q  364 ttggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||||| ||||   |||||||||||  |||||||| |||||||||| ||||||||||||||    
T  42538533 ttggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 42538448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 365 - 449
Target Start/End: Complemental strand, 24001113 - 24001029
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||||||| ||||   |||||||||||  |||||||| |||||||||| ||||||||||||||    
T  24001113 tggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 24001029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 5194331 - 5194248
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||| ||||||| ||||| ||||||||||||  |||| ||| |||||||||||||| ||||||||||    
T  5194331 ggaaaatgttacatgaacaccatttattcatacacctcattgtacaccctatgttttaaggatattttgataaattcatctcac 5194248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 368 - 449
Target Start/End: Original strand, 44326180 - 44326261
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||| |||||||||||||| ||||   ||||||||||||||| ||||| |||||||||| ||||||||||||||    
T  44326180 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcac 44326261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 43343722 - 43343641
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||| | ||||||  |||||   |||||||||| ||||||||| |||||||||||||||||||||||||    
T  43343722 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcac 43343641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 44417032 - 44416951
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||| | ||||||  |||||   |||||||||| ||||||||| |||||||||||||||||||||||||    
T  44417032 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcac 44416951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 43317443 - 43317526
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||| ||||||| ||||| |||||||||| |  |||  ||| |||||||||||||| ||||||||||    
T  43317443 ggaaaatgttacatgaacaccatttattcatacacctcattgtacatcctatgctttagggatattttgataaattcatctcac 43317526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 365 - 449
Target Start/End: Original strand, 45326019 - 45326103
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||| |||||||| |||||| ||||||| ||||   ||||||||||| ||| ||||| |||||||||| ||||||||||||||    
T  45326019 tggaaagtgttacataaacaccttttattcatacatcacattgtacaccccatatattagggatattttggtaagttcatctcac 45326103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 367 - 449
Target Start/End: Complemental strand, 31408732 - 31408650
Alignment:
Q  367 gaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||| || ||||||  |||||||| | |||| |||| |||||||||| ||| ||||| ||||    
T  31408732 gaaaatgttacatgaacaccctttaatcatacactctattgtacatcccatgcattaaggatattttggtaaattcatttcac 31408650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 449
Target Start/End: Original strand, 10573751 - 10573832
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||| |||||||||||||| ||||    |||||||||| ||||||||| | |||||||| ||| ||||||||||    
T  10573751 aaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggtaaattcatctcac 10573832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 446
Target Start/End: Complemental strand, 26898499 - 26898422
Alignment:
Q  369 aaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatct 446  Q
    |||||||||||||||||| ||||||| |||||   ||||||||   ||||||||| |||||||||| |||||||||||    
T  26898499 aaatgttacatgaacaccttttattcatacacccaattgtacattccatgtattagggatattttggtaagttcatct 26898422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 449
Target Start/End: Original strand, 31513285 - 31513370
Alignment:
Q  364 ttggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||| ||||| || |||||   |||||| ||| |||| |||| |||||||||| ||| ||||||||||    
T  31513285 ttggaaaatgttacatgaacactctttaatcatacaccctattgtataccccatgcattaaggatattttggtaaattcatctcac 31513370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 449
Target Start/End: Complemental strand, 38160656 - 38160596
Alignment:
Q  389 ttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||||  ||| ||||||||||    
T  38160656 ttattcttacactccattgtacaccccatgtattagggatattttagtaacttcatctcac 38160596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 9216302 - 9216384
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||| || |    |||||||||| |||| ||||  ||||||||| ||||||||||||||    
T  9216302 ggaaaatgttacatgaacaccctttattcctatatcctattgtacacc-catgcattagagatattttggtaagttcatctcac 9216384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 27535331 - 27535248
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||| || ||||||  |||||||||  ||||| |||  || |||||| ||| ||||||||||    
T  27535331 ggaaaatgttacatgaacaccctttaatcatacactctattgtacactccatgtgttaaagacattttggtaatttcatctcac 27535248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 40236919 - 40237002
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||| || ||||    |||||||||| |||| |||| ||| |||||| ||| ||||||||||    
T  40236919 ggaaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggtaatttcatctcac 40237002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 41861674 - 41861759
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattat--ggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||| |||||   ||| ||||||  |||||||||   ||||||||| |||||| |||||||    
T  41861674 ggaaaatgttacatgaacaccctttattcatacacccaattatacaccctatgtattatagagatattttggtaagtttatctcac 41861759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 16180454 - 16180374
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||| |||||| ||||||| |||||  ||||||||||| || |||||||  |||||||| ||| ||||||||||    
T  16180454 aaaatgttacatcaacaccatttattcctacacc-cattgtacaccccacgtattataaatattttggtaaattcatctcac 16180374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 446
Target Start/End: Complemental strand, 32029908 - 32029837
Alignment:
Q  375 tacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatct 446  Q
    ||||| |||||  ||||||| |||||  ||||||||||| ||||||||| |||||||||| ||| |||||||    
T  32029908 tacataaacactttttattcctacaccccattgtacaccccatgtattagggatattttggtaaattcatct 32029837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 433
Target Start/End: Original strand, 39998405 - 39998475
Alignment:
Q  363 attggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatatttt 433  Q
    |||||||||||||||||||||||  |||| || ||||    |||||||||| ||||||||| |||||||||    
T  39998405 attggaaaatgttacatgaacacattttaatcatacatcctattgtacaccccatgtattagggatatttt 39998475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 399
Target Start/End: Complemental strand, 38160694 - 38160661
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttaca 399  Q
    ||||||||||||||||||||||||||||| ||||    
T  38160694 ggaaaatgttacatgaacaccctttattcctaca 38160661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 365 - 449
Target Start/End: Original strand, 29705361 - 29705445
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||||||  |||||  ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  29705361 tggaaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtattagggatattttgataagttcatctcac 29705445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 368 - 449
Target Start/End: Original strand, 42295197 - 42295278
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||  ||||||||| |||||||||| ||||||||||||||    
T  42295197 aaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaagttcatctcac 42295278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 368 - 449
Target Start/End: Original strand, 42699259 - 42699340
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||| |||||  |||||||||||| ||||||||||||||||||  ||||||||||||||    
T  42699259 aaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattatggatatttttgtaagttcatctcac 42699340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 2546996 - 2547079
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||| |||||||  |||||| ||||||||||||||||||||| |||||||||  ||||||||||||||    
T  2546996 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttagtaagttcatctcac 2547079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 30912660 - 30912579
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||| |||||  |||||||||| |||||||||| || ||||||| ||||||||||||||    
T  30912660 aaaatgttacatgaacaccctttattcctacaccccattgtacacttcatgtattaggggtattttggtaagttcatctcac 30912579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 365 - 449
Target Start/End: Original strand, 11582765 - 11582849
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||||||| ||||   |||||||||||  |||||||| |||||||||| ||||||||||||||    
T  11582765 tggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 11582849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 36743583 - 36743500
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||| ||||   |||||||||||  |||||||| |||||||||| ||||||||||||||    
T  36743583 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 36743500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 368 - 449
Target Start/End: Original strand, 20148762 - 20148843
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||| |||||||||||||| ||||   ||||||||||||||| ||||| |||||||||| ||||||||||||||    
T  20148762 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcac 20148843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 368 - 449
Target Start/End: Original strand, 26125637 - 26125718
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||| |||||||||||||| |||| | |||||||||||  |||||||| |||||||||| ||||||||||||||    
T  26125637 aaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaagttcatctcac 26125718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 374 - 449
Target Start/End: Original strand, 31384672 - 31384747
Alignment:
Q  374 ttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||| |  |||||||||| ||||||||| | |||||||| ||||||||||||||    
T  31384672 ttacatgaacaccctttattcttacattctattgtacaccccatgtattaggaatattttggtaagttcatctcac 31384747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 29801048 - 29800967
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||| |||||| ||||||| ||||   ||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  29801048 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcac 29800967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 446
Target Start/End: Complemental strand, 30660842 - 30660762
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatct 446  Q
    ||||||||||||||||||||||||||||  ||||   |||||||||||  |||||||| |||||||||| |||||||||||    
T  30660842 ggaaaatgttacatgaacaccctttatttctacatcccattgtacaccctatgtattagggatattttggtaagttcatct 30660762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 5754903 - 5754986
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||| ||||||| ||||   ||||||||| | ||| ||||| |||||||||| ||||||||||||||    
T  5754903 ggaaaatgttacatgaacaccttttattcctacatcccattgtacatcccatatattagggatattttggtaagttcatctcac 5754986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 42197535 - 42197452
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||| ||||||| |||||  ||||| ||||   |||||||| |||||||||| ||||||||||||||    
T  42197535 ggaaaatgttacatgaacaccatttattcctacaccccattgcacacactatgtattagggatattttggtaagttcatctcac 42197452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 366 - 448
Target Start/End: Complemental strand, 2166063 - 2165981
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctca 448  Q
    ||||||| ||||||||||||| ||||||| |||||  ||||||| ||| |||||||||  ||||||||| |||||||||||||    
T  2166063 ggaaaatattacatgaacaccatttattcctacaccccattgtataccccatgtattagagatattttggtaagttcatctca 2165981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 367 - 449
Target Start/End: Original strand, 45397317 - 45397399
Alignment:
Q  367 gaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||| |||||||||||||||| |||||  |||| ||||||  |||||||| |||||||||  ||||||||||||||    
T  45397317 gaaaatgttacgtgaacaccctttattcctacaccccattctacaccctatgtattagggatatttttgtaagttcatctcac 45397399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 18066818 - 18066735
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||| || |||| |  |||||||| | ||||||||| |||||||||  ||| ||||||||||    
T  18066818 ggaaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggatattttagtaatttcatctcac 18066735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 35181516 - 35181599
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||| || |||||   |||||||||| |||| |||| ||| |||||| ||| ||||||||||    
T  35181516 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcac 35181599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 449
Target Start/End: Original strand, 1375540 - 1375625
Alignment:
Q  364 ttggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||| ||||||||||||| ||||||| |||||   |||||||||| ||| ||||| |||||||||| ||| || |||||||    
T  1375540 ttggaaaattttacatgaacaccttttattcatacacccaattgtacaccccatatattagggatattttggtaaatttatctcac 1375625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 34304788 - 34304871
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||| |||||| || |||||   |||||||||| |||| |||| ||| |||||| ||| ||||||||||    
T  34304788 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcac 34304871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 33630091 - 33630010
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||| |||||||||||| || ||||| ||||||||||||  ||| |||| ||| |||||  ||| ||||||||||    
T  33630091 aaaatgttacacgaacaccctttaatcatacacctcattgtacaccctatgcattagggacattttagtaatttcatctcac 33630010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 16603726 - 16603643
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||| |||||||||| || ||||| | ||| |||||| |||| ||||  || |||||| ||| ||||||||||    
T  16603726 ggaaaatgttacatgcacaccctttaatcatacaccttattatacaccccatgcattaaagacattttggtaaattcatctcac 16603643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 400
Target Start/End: Original strand, 28977145 - 28977180
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacac 400  Q
    |||||||||||||||||||||||||||||| |||||    
T  28977145 tggaaaatgttacatgaacaccctttattcctacac 28977180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 366 - 446
Target Start/End: Original strand, 27550309 - 27550389
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatct 446  Q
    ||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||| |||||||||| |||||||||||    
T  27550309 ggaaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatct 27550389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 1771366 - 1771283
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||| |||||  ||||||||||| |||||||||  ||||||||||||||||||||||||    
T  1771366 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagagatattttgataagttcatctcac 1771283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 43514784 - 43514703
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||| |||||| |||||||||| |||||||||| || ||||||| ||||||||||||||    
T  43514784 aaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggtaagttcatctcac 43514703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 365 - 448
Target Start/End: Complemental strand, 27316814 - 27316731
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctca 448  Q
    |||||||||||| | ||||||||||||||| ||||| ||||| |||||| ||||||||| |||||||||| |||||||||||||    
T  27316814 tggaaaatgttaaacgaacaccctttattcctacacctcattatacaccccatgtattaaggatattttggtaagttcatctca 27316731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 33703141 - 33703224
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||  ||||  | |||||||||| ||||||||| |||||||||| ||||||||||||||    
T  33703141 ggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcac 33703224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 48463550 - 48463467
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||| |||||| ||||||| |||| ||||||||||| | ||||||||| |||||||||| ||||||||||||||    
T  48463550 ggaaaatgttacataaacaccatttattcatacatttcattgtacatcccatgtattagggatattttggtaagttcatctcac 48463467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 364 - 446
Target Start/End: Original strand, 12496954 - 12497036
Alignment:
Q  364 ttggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatct 446  Q
    ||||||||||||| ||||||||||||||||| |||||| ||||||||| | |||||||||  ||||||||| |||||||||||    
T  12496954 ttggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatct 12497036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 366 - 448
Target Start/End: Original strand, 28988473 - 28988555
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctca 448  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||| |||| | || ||| |||||||||| |||||||||    
T  28988473 ggaaaatgttacatgaacaccctttattcatacacctcattgtacaccccatgcactagggacattttgataaattcatctca 28988555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 368 - 449
Target Start/End: Original strand, 39631102 - 39631184
Alignment:
Q  368 aaaatgttacatgaacacccttt-attcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||| ||||||||| |||||| |||| ||||| |||||||||||||||||||||| |||||||||| ||||||||||||||    
T  39631102 aaaatgatacatgaacccccttttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcac 39631184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 367 - 449
Target Start/End: Original strand, 41878407 - 41878489
Alignment:
Q  367 gaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||  ||  |||| |||||||||||||||||||||||||    
T  41878407 gaaaatgttacatgaacactctttattcatacacctcattgtacaccctatccattagggatattttgataagttcatctcac 41878489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 365 - 449
Target Start/End: Original strand, 35017732 - 35017815
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||||||| || |  |||||||||||| |||||| || |||||||||| ||||||||||||||    
T  35017732 tggaaaatgttacatgaacaccctttattcctatatctcattgtacaccccatgta-tagggatattttggtaagttcatctcac 35017815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 25051693 - 25051776
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||| |||||||||| |||||||| |||||  |||||||||||  |||||||| |||||||||| ||||||||||||||    
T  25051693 ggaaaatgtcacatgaacacactttattcctacaccccattgtacaccctatgtattagggatattttggtaagttcatctcac 25051776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 27864564 - 27864647
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||| |||||| ||||||| ||||   ||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  27864564 ggaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcac 27864647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 55966446 - 55966363
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||| |||||||||||||| ||||   ||||||||| | ||||||||| |||||||||| ||||||||||||||    
T  55966446 ggaaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggtaagttcatctcac 55966363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 43949900 - 43949818
Alignment:
Q  368 aaaatgttacatgaacacccttt-attcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||| |||||||||||||||| |||| | ||| |||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  43949900 aaaatgatacatgaacacccttttattcctgcacctcattgtacaccccatgtattagggatattttggtaagttcatctcac 43949818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 363 - 449
Target Start/End: Complemental strand, 55272479 - 55272393
Alignment:
Q  363 attggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||| |||||| || ||||||  |||||||||| |||| |||| |||||||||| ||| ||||||||||    
T  55272479 attggaaaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcac 55272393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 28982922 - 28982839
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||  |||||   |||||||| | ||| ||||| |||||||||| ||||||||||||||    
T  28982922 ggaaaatgttacatgaacaccctttatttctacaccctattgtacatcccatatattagggatattttggtaagttcatctcac 28982839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 27893940 - 27893859
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||| |||||| ||||||| ||||   ||||||||||| ||||||||| |||||||||| ||| ||||||||||    
T  27893940 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcac 27893859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 365 - 449
Target Start/End: Complemental strand, 17619253 - 17619169
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||| |||| || |||||   |||||||||| |||| |||| |||||||||| ||| ||||||||||    
T  17619253 tggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcac 17619169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 711960 - 712043
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||| || |||||   ||||||||||  ||| |||| |||||||||| ||| ||||||||||    
T  711960 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggtaaattcatctcac 712043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 449
Target Start/End: Original strand, 31680904 - 31680985
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||| | |||||| ||||||| |||| | ||||||||||| | | ||||| |||||||||| ||||||||||||||    
T  31680904 aaaatgttacgtaaacaccatttattcatacattccattgtacaccccgtatattagggatattttggtaagttcatctcac 31680985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 449
Target Start/End: Original strand, 35037007 - 35037088
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||| |||||||||  | ||||||  |||||||||| |||| |||| |||||||||| ||| ||||||||||    
T  35037007 aaaatgttacatgagcaccctttaaccatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcac 35037088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 449
Target Start/End: Original strand, 43735744 - 43735825
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||| ||||||||||| ||||||||| ||||  ||||| ||||   |||||||||  ||||||||||||||||||||||||    
T  43735744 aaaatattacatgaacatcctttattcctacatctcattatacattccatgtattagagatattttgataagttcatctcac 43735825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 23035980 - 23036063
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||  ||||||||| |||||   ||||||||||  || ||||| |||||||||  ||||||||||||||    
T  23035980 ggaaaatgttacatgaacctcctttattcctacaccctattgtacaccctatatattagggatatttttgtaagttcatctcac 23036063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 448
Target Start/End: Original strand, 21687006 - 21687088
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctca 448  Q
    ||||||||||||||||||| |||||||| ||||||  |||| |||| || ||||||||   |||||||  |||||||||||||    
T  21687006 ggaaaatgttacatgaacatcctttatttttacaccccattatacatcttatgtattagaaatattttagtaagttcatctca 21687088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 433
Target Start/End: Complemental strand, 3756344 - 3756279
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatatttt 433  Q
    |||||||||||||||||||||||| || |||||   |||||||||| |||| |||| |||||||||    
T  3756344 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatatttt 3756279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 446
Target Start/End: Complemental strand, 960970 - 960890
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatct 446  Q
    |||||||||||||||||||||||||| || ||||||  ||||||||||  ||  |||| ||| |||||| ||| |||||||    
T  960970 ggaaaatgttacatgaacaccctttaatcatacactctattgtacaccctatacattagggacattttggtaaattcatct 960890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 449
Target Start/End: Complemental strand, 23204875 - 23204795
Alignment:
Q  369 aaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||| |||||||| ||||   ||||||||| |  |||||||| |||||||||  ||||||||| ||||    
T  23204875 aaatgttacatgaacactctttattcctacatcccattgtacatcctatgtattagggatatttttgtaagttcatgtcac 23204795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 449
Target Start/End: Complemental strand, 45490414 - 45490330
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||  ||||||  ||||    |||||||||||||||||||| ||||| |||  ||| ||||||||||    
T  45490414 tggaaaatgttacatgaacacattttatttatacatccaattgtacacctcatgtattagggatactttagtaaattcatctcac 45490330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 32728357 - 32728440
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||| |||||| || |||||   |||||||||| |||| |||| ||| |||||  ||| ||||||||||    
T  32728357 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacattttagtaaattcatctcac 32728440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 413
Target Start/End: Complemental strand, 46827806 - 46827759
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacc 413  Q
    |||||||||||||||||||||||||| || ||||||  ||||||||||    
T  46827806 ggaaaatgttacatgaacaccctttaatcatacactctattgtacacc 46827759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 41327641 - 41327560
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||  |||||||||||||  ||||  |||||||||||| ||| | || ||| |||||| ||| ||||||||||    
T  41327641 aaaatgttacatagacaccctttattcacacaccccattgtacaccttatgcactacggacattttggtaaattcatctcac 41327560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 446
Target Start/End: Complemental strand, 49229764 - 49229684
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatct 446  Q
    ||||||||||| ||||||| |||||| || |||||   ||||||||| ||||| |||| ||||||| || ||| |||||||    
T  49229764 ggaaaatgttatatgaacatcctttaatcatacaccctattgtacacttcatgcattaaggatattctggtaaattcatct 49229684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 367 - 449
Target Start/End: Original strand, 112656 - 112738
Alignment:
Q  367 gaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||||| |||| | |||||||||||  |||||||| |||||||||| ||||||||||||||    
T  112656 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcac 112738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 367 - 449
Target Start/End: Original strand, 19047158 - 19047240
Alignment:
Q  367 gaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||||| |||| | |||||||||||  |||||||| |||||||||| ||||||||||||||    
T  19047158 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcac 19047240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 365 - 449
Target Start/End: Original strand, 1750413 - 1750497
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||||||| |||||  |||||||||||  |||||||| |||||||||  ||||||||||||||    
T  1750413 tggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcac 1750497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 30838632 - 30838715
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||  ||||  | |||||||||| ||||||||| |||||||||| ||||||||||||||    
T  30838632 ggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcac 30838715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 365 - 449
Target Start/End: Original strand, 16096746 - 16096830
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||||||| |||||  |||| |||||| ||||||||| |||||||||| | |||| |||||||    
T  16096746 tggaaaatgttacatgaacaccctttattcctacaccccattatacaccccatgtattagggatattttggtgagttaatctcac 16096830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 12302353 - 12302270
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||  |||||  |||||||||||  |||||||| |||||||||  ||||||||||||||    
T  12302353 ggaaaatgttacatgaacaccctttatttctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcac 12302270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 43335863 - 43335780
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||| ||||||| | ||||||| ||||| |||||||||| | ||||||||| |||||||||| ||||||||||||||    
T  43335863 ggaaaatgttatatgaacatcatttattcctacacctcattgtacatcccatgtattagggatattttggtaagttcatctcac 43335780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 368 - 445
Target Start/End: Original strand, 33229303 - 33229381
Alignment:
Q  368 aaaatgttacatgaacacccttt-attcttacacttcattgtacacctcatgtattatggatattttgataagttcatc 445  Q
    |||||| |||||||||||||||| |||| ||||| |||||||||||| ||||||||| |||||||||| ||||||||||    
T  33229303 aaaatgatacatgaacacccttttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatc 33229381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 448
Target Start/End: Complemental strand, 43490499 - 43490419
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctca 448  Q
    ||||||||||||||||||||||||||| ||||   ||||||||||   |||||||| |||||||||| |||||||||||||    
T  43490499 aaaatgttacatgaacaccctttattcctacatcccattgtacactctatgtattagggatattttggtaagttcatctca 43490419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 41282072 - 41281991
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||| || |||||   |||||||||| |||| |||| ||| |||||||||| ||||||||||    
T  41282072 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttgataatttcatctcac 41281991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 365 - 449
Target Start/End: Complemental strand, 12415561 - 12415477
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||| || ||||| | |||||||||| |||| |||| ||| |||||| ||| || |||||||    
T  12415561 tggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcac 12415477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 365 - 449
Target Start/End: Complemental strand, 12427621 - 12427537
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||| || ||||| | |||||||||| |||| |||| ||| |||||| ||| || |||||||    
T  12427621 tggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcac 12427537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 365 - 449
Target Start/End: Complemental strand, 13780836 - 13780752
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||| |||||  |||||||  |||| |||||||||||| |||  |||| |||||||||||||| ||||||||||    
T  13780836 tggaaaatgttacatcaacacattttattcacacacctcattgtacaccccatacattagggatattttgataaattcatctcac 13780752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 4764826 - 4764743
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||| |||||| ||||||| |||||   |||||||||| ||||||||||  |||||||| ||| ||||||||||    
T  4764826 ggaaaatgttacatcaacaccatttattcctacaccctattgtacaccccatgtattataaatattttggtaaattcatctcac 4764743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 16803968 - 16804051
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||| || |||||   |||||||| | |||| |||| ||| |||||||||| ||||||||||    
T  16803968 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcac 16804051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 16843250 - 16843333
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||| || |||||   |||||||| | |||| |||| ||| |||||||||| ||||||||||    
T  16843250 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcac 16843333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 18491705 - 18491788
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||| || |||||   ||||||||||||||| |||| | | |||||| ||| ||||||||||    
T  18491705 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcattaagaacattttggtaaattcatctcac 18491788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 43114557 - 43114640
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||| || |||||   |||||||||| |||| |||| ||| |||||| ||| ||||||||||    
T  43114557 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcac 43114640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 367 - 449
Target Start/End: Complemental strand, 34817875 - 34817793
Alignment:
Q  367 gaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||  |||| |||||||||||| |||| | || | | |||||| ||| ||||||||||    
T  34817875 gaaaatgttacatgaacaccctttattcacacacctcattgtacaccccatgcactacgcacattttggtaaattcatctcac 34817793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 11825752 - 11825671
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||| || |||||   |||||||||| |||| |||| ||| |||||| ||| ||||||||||    
T  11825752 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcac 11825671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 6518566 - 6518486
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||| |||||| || ||||||  |||||||||| |||| |||| ||| |||||| ||| ||||||||||    
T  6518566 aaaatgttacatgaaca-cctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcac 6518486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 449
Target Start/End: Complemental strand, 42849916 - 42849875
Alignment:
Q  408 tacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  42849916 tacaccccatgtattagggatattttgataagttcatctcac 42849875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 966934 - 966851
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||||||||||||| || |||||   |||||||||| |||| |||| | |  ||||| ||| ||||||||||    
T  966934 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaagaacgttttggtaaattcatctcac 966851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 400
Target Start/End: Complemental strand, 42849947 - 42849912
Alignment:
Q  365 tggaaaatgttacatgaacaccctttattcttacac 400  Q
    |||||||||||||||||||||||||||||| |||||    
T  42849947 tggaaaatgttacatgaacaccctttattcctacac 42849912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 413
Target Start/End: Complemental strand, 8896681 - 8896636
Alignment:
Q  368 aaaatgttacatgaacaccctttattcttacacttcattgtacacc 413  Q
    |||||||||||||||||||||||||||  ||| | |||||||||||    
T  8896681 aaaatgttacatgaacaccctttattcacacattccattgtacacc 8896636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 393
Target Start/End: Original strand, 42849966 - 42849994
Alignment:
Q  365 tggaaaatgttacatgaacaccctttatt 393  Q
    |||||||||||||||||||||||||||||    
T  42849966 tggaaaatgttacatgaacaccctttatt 42849994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 364 - 446
Target Start/End: Complemental strand, 23523 - 23441
Alignment:
Q  364 ttggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatct 446  Q
    ||||||||||||| ||||||||||||||||| |||||| ||||||||| | |||||||||  ||||||||| |||||||||||    
T  23523 ttggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatct 23441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 11251 - 11334
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||| |||||||||| |||||||| |||||  ||||||||||| ||| ||||| |||||||||| ||||||||||||||    
T  11251 ggaaaatgtcacatgaacacactttattcatacaccccattgtacaccccatatattagggatattttggtaagttcatctcac 11334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 14288 - 14205
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||  |||||  ||||||||| |  |||||||| |||||||||  ||||||||||||||    
T  14288 ggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctcac 14205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 24616 - 24533
Alignment:
Q  366 ggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    ||||||||||||||||||||||||||||  |||||  ||||||||| |  |||||||| |||||||||  ||||||||||||||    
T  24616 ggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctcac 24533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 363 - 449
Target Start/End: Complemental strand, 45822 - 45736
Alignment:
Q  363 attggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||| |||||||||||||||||||||||| || |||||   |||||||| |  |||||||| |||||||||| ||| ||||||||||    
T  45822 attgaaaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcac 45736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 449
Target Start/End: Complemental strand, 35558 - 35473
Alignment:
Q  364 ttggaaaatgttacatgaacaccctttattcttacacttcattgtacacctcatgtattatggatattttgataagttcatctcac 449  Q
    |||||||||||||||| |||||| |||| || |||||   |||||||||| |||| |||| ||| || ||| ||| ||||||||||    
T  35558 ttggaaaatgttacataaacaccatttaatcatacaccatattgtacaccccatgcattagggacatattggtaaattcatctcac 35473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University