View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4806_low_7 (Length: 435)
Name: NF4806_low_7
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 15 - 407
Target Start/End: Complemental strand, 2660849 - 2660460
Alignment:
| Q |
15 |
gaccgaccaggtgggttaaataattttgaaaaagaatttagatctaaaagatgaatttgtgagaaaaggaagaagataagaaattctaccctagtgaagt |
114 |
Q |
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| T |
2660849 |
gaccgaccaggtgggttaaataattttgaaaaagaatttagatctaaaagatgaatttgtgagaaaa---agaagataagaaactctaccgtagtgaagt |
2660753 |
T |
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| Q |
115 |
gaaattggagtggtgttttggtatagttcttgtgggatacaaatctacaaatgaaaccgaatatttatgcagggggagtaggttgtatgtttattttttg |
214 |
Q |
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| T |
2660752 |
gaaattggagtggtgttttggtataattcttgtgggatacaaatctacaaatgaaaccgaatatttatgcagggggagtaggttgtatgtttattttttg |
2660653 |
T |
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| Q |
215 |
gaaacagagtaggtggtactatgtgtgtttggttggttgcattagttaagtatgtactacatgagtagggttacactctgaatctattgaatgtttcaat |
314 |
Q |
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| T |
2660652 |
gaaacagagtaggtggtactatgtgtgtttggttggtttcattggttaagtatgtactgcatgagtagggttacactctgaatctattgaatgtttcaat |
2660553 |
T |
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| Q |
315 |
gcttatgaagttgcataccataacataaacatttcaataagtgtatttattgggtaccaagatttgaaatggtgatggtgcttcgcatgctag |
407 |
Q |
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| T |
2660552 |
gcttatgaagttgcataccataacataaacatttcaataagtgtattttttgggtaccaagatttgaaatggtgatggtgcttcgcatgctag |
2660460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 308 - 387
Target Start/End: Original strand, 43660953 - 43661034
Alignment:
| Q |
308 |
tttcaatgcttatgaagttgcataccataacataaacatttcaataagtgtatttat--tgggtaccaagatttgaaatggt |
387 |
Q |
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| T |
43660953 |
tttcaatgcttatgaagctgcataccataacataaacatttcaataagtgtggttattatgggcacctagatttgaaatggt |
43661034 |
T |
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