View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4806_low_8 (Length: 431)
Name: NF4806_low_8
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 20 - 426
Target Start/End: Complemental strand, 1241427 - 1241026
Alignment:
| Q |
20 |
atgttccctttattcttaacttcaagctgaacaatacagctgaaaagtgaactctcacaagacaaagcaaggtgttcctgccttttctatgtctcttctc |
119 |
Q |
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| T |
1241427 |
atgttccctttattcttaacttcaagctgaacaatacagcttaaaagtgaactctcacaagacaaagcaaggtgttcctaccttttctatgtctcttctc |
1241328 |
T |
|
| Q |
120 |
aatcactagttttatttcctaaaactcacaataataataataacaacaaaatcaacccaaaaaactatttgccatcttacttctatagcatctcaaaaca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||| |
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| T |
1241327 |
aatcactagttttatttcctaaaactcacaataataataataacaacaaaatcaacccaaaaaactattttccttcttacttctatagcctctcaaaaca |
1241228 |
T |
|
| Q |
220 |
tcccataattaatgtctcataaaaattaaccaattttagtctcaagaattgaacatcttctacaannnnnnnnnnnaaaaaactcaatatgaaaccttca |
319 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1241227 |
tccca----taatgtctcataaaaattaacctattttagtctcaagaattgaacatcttctacaa-tttttttttaaaaaaactcaatatgaaaccttca |
1241133 |
T |
|
| Q |
320 |
acagaatcaaccaaggacacagccattgacattgataattcatcttccaaaagagtatctttctctgaccaacagcaacagcaccaacacaatgttcctt |
419 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1241132 |
acagaatcaaccaaggacacaaccattgacattgataattcatcttccaaaagagtatctttctctgaccaacagcaacagcaccaacacaatgttcctt |
1241033 |
T |
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| Q |
420 |
tgctact |
426 |
Q |
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|| |||| |
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| T |
1241032 |
tgttact |
1241026 |
T |
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