View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4806_low_9 (Length: 431)
Name: NF4806_low_9
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 8 - 417
Target Start/End: Original strand, 26017423 - 26017841
Alignment:
| Q |
8 |
gagatgaaagtgatattgaggaagcagtgaagcatggttacctcaaaacagattcagatttcttaaaagaggatcttaatggtggctcttgctgcgtaac |
107 |
Q |
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| T |
26017423 |
gagatgaaagtgatattgaggaagcagtgaagcatggttacctcaaaacagattcagatttcttaaaagaagatcttaatggtggctcttgctgtgtaac |
26017522 |
T |
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| Q |
108 |
agcatttattaggaatggtaaccttgttgtgtccaatgcaggcgattgtcgcgctgtcataagtagaggaggtcttgctgaggccttaacatctgatcac |
207 |
Q |
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| T |
26017523 |
agcatttattaggaatggtaaccttgttgtgtccaatgcaggcgattgtcgcgctgtcatcagtagaggaggtgttgctgaggccttaacgtcggatcac |
26017622 |
T |
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| Q |
208 |
aaaccttcgaggaaagacgaaaaggaacggattgaaactcaggtaagtg---------atgatgatgatggcgattttcctgtttgtctttcgtaattga |
298 |
Q |
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| T |
26017623 |
aaaccttcaaggaaagacgaaaaagaacgaattgaaactcaggtaattgattatgataatgatgatgatagcaatttttccgtttgtcgttggtaattga |
26017722 |
T |
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| Q |
299 |
aacctttgtttgtagtttaggatatcttaaaggtactaaattagttttgaa----nnnnnnnagggaggatatgttgatatgtgccgcggtgtttggaga |
394 |
Q |
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| T |
26017723 |
aacc----tttgtagtttaggatctcatgaaggtacttagttagttttgaaatttattttgtagggaggatatgtagatatgtgccgcggtgtttggaga |
26017818 |
T |
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| Q |
395 |
atccaaggatctcttgctgtttc |
417 |
Q |
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| T |
26017819 |
atccaaggatctcttgctgtttc |
26017841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 26002611 - 26002856
Alignment:
| Q |
8 |
gagatgaaagtgatattgaggaagcagtgaagcatggttacctcaaaacagattcagatttcttaaaagaggatcttaatggtggctcttgctgcgtaac |
107 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |
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| T |
26002611 |
gagatgagagtgatattgaggaagcagtgaaacatggttacctcaaaacagattcagatttcttaaaagaagatcttaatggtggttcttgctgtgtaac |
26002710 |
T |
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| Q |
108 |
agcatttattaggaatggtaaccttgttgtgtccaatgcaggcgattgtcgcgctgtcataagtagaggaggtcttgctgaggccttaacatctgatcac |
207 |
Q |
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| T |
26002711 |
agcattaattagaaatggcaaccttgttatgtccaatgccggtgattgtcgtgctgtcatcagccatggaggtgctgctgaagccttaacatcagatcac |
26002810 |
T |
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| Q |
208 |
aaaccttcgaggaaagacgaaaaggaacggattgaaactcaggtaa |
253 |
Q |
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| T |
26002811 |
aaaccttcgaggaaagacgaaaaagaacggattgagactcaggtaa |
26002856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 357 - 417
Target Start/End: Original strand, 26003035 - 26003095
Alignment:
| Q |
357 |
agggaggatatgttgatatgtgccgcggtgtttggagaatccaaggatctcttgctgtttc |
417 |
Q |
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| T |
26003035 |
agggaggatatgtcgatatgtgccgcggtgtttggagaatccaaggatctcttgctgtttc |
26003095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 30373951 - 30374166
Alignment:
| Q |
18 |
tgatattgaggaagcagtgaagcatggttacctcaaaacagattcagatttcttaaaagaggatcttaatggtggctcttgctgcgtaacagcatttatt |
117 |
Q |
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| T |
30373951 |
tgatgttgaggaggcagtgaagcgcggttacctcaataccgattctgagttcatgaaaaaagatctacatggtggttcttgttgtgtgacagcattcatt |
30374050 |
T |
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| Q |
118 |
aggaatggtaaccttgttgtgtccaatgcaggcgattgtcgcgctgtcataagtagaggaggtcttgctgaggccttaacatctgatcacaaaccttcga |
217 |
Q |
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| T |
30374051 |
aggaatggtaacttagttgtgtctaatgctggtgattgccgtgctgttattagtagaggaggggttgctgaggcactaacatctgatcaccgtccttcaa |
30374150 |
T |
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| Q |
218 |
ggaaagacgaaaagga |
233 |
Q |
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| T |
30374151 |
gggaagacgaaaagga |
30374166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 30374295 - 30374344
Alignment:
| Q |
365 |
tatgttgatatgtgccgcggtgtttggagaatccaaggatctcttgctgt |
414 |
Q |
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| T |
30374295 |
tatgttgatttatgtcgcggtgtttggaggattcaaggatctcttgctgt |
30374344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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