View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4807-Insertion-2 (Length: 741)
Name: NF4807-Insertion-2
Description: NF4807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4807-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 8 - 355
Target Start/End: Original strand, 30141637 - 30141984
Alignment:
| Q |
8 |
gaagtttcctaacattcaccgcatttagtttatgttacaaaaagtttccaaaactctatctcagaatagtaaaaattgttgaatggttaaattatttgca |
107 |
Q |
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| T |
30141637 |
gaagtttcctaacattcaccgcatttagtttatgtcacaaaaagtttccaaaactctatcacagaatagtaaaaattgttgaatggttaaattatttgca |
30141736 |
T |
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| Q |
108 |
agtctttgtggatgccataaataaggtgctttgattgtcgatatagatttatcaataaaccattttgttttagcaagaacaaaatgacctagattattcc |
207 |
Q |
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| T |
30141737 |
agtctttgtggatgccataaataaggtgctttgattgttgatatagatttatcaataaaccatttggttttagcaagaacaaaatgacctagattattcc |
30141836 |
T |
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| Q |
208 |
aaatagaatttccaattcccactttattcaaagatatcaaaggcagacaacaaaattgcatttaaatctttcggcgacaggttttatccacataaattat |
307 |
Q |
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| T |
30141837 |
aaatagaatttccaattccaactttattcaaagatatcaaaagcagacaacaaaattgcatttaaatctttctgcaacaggttttatccacataaattat |
30141936 |
T |
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| Q |
308 |
aaacatggggtcggaccttttctatctgggactgtcaaattcgttgtg |
355 |
Q |
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| T |
30141937 |
aaacacggggtcggaccttttctatctgggactgtcaaattcgttgtg |
30141984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 420 - 741
Target Start/End: Original strand, 30142048 - 30142367
Alignment:
| Q |
420 |
taactcgtttcattcgtcaaaataataacaatacataatggaatgcactcaaagacttgatgactcgcatatggcaacgtcgttcgagccagtaaatcag |
519 |
Q |
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| T |
30142048 |
taactcgtttcattcgtcaaaataataacaatacatgatggaatgtactcaaagacttgatgactcgcatatgacaacgtcgttcgagccagtaaatcag |
30142147 |
T |
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| Q |
520 |
gtacattgttttcttgattcgtaatgaaactcattcttaagtttggtaaagagtgcataacagttctataagtatataataaagcaccgaactctgttct |
619 |
Q |
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| T |
30142148 |
gtacattgttttcttgattcgtaatgaaactcattcttaagtttggtaaagagtgcataacagttctataagtatataataaagcactgaactctgttct |
30142247 |
T |
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| Q |
620 |
atgactcaatttacccgaaatataattaacatcaacgactagcttaaaatctacttctattgacactcgattataaccctatattcataagttagagtat |
719 |
Q |
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| T |
30142248 |
atgactcaatttacccgaaatataattaccatcaacgactagcttgaaatctacttctattgacactcgattataa-cctagattcataagttagagtat |
30142346 |
T |
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| Q |
720 |
cacttgtttcggaccccacgct |
741 |
Q |
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| T |
30142347 |
cacttgtttc-gaccccacgct |
30142367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 541 - 637
Target Start/End: Complemental strand, 33884663 - 33884567
Alignment:
| Q |
541 |
taatgaaactcattcttaagtttggtaaagagtgcataacagttctataagtatataataaagcaccgaactctgttctatgactcaatttacccga |
637 |
Q |
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| T |
33884663 |
taatgaaacttaccctaaagtttgataaagagtgcataatagttttacaatcatataataaagcactgaactacattctttgactcaatctacccga |
33884567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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