View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4807-Insertion-3 (Length: 612)
Name: NF4807-Insertion-3
Description: NF4807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4807-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 210
Target Start/End: Original strand, 1704217 - 1704420
Alignment:
| Q |
7 |
aaatatgtaccaataacttctgcagttaccttttgtatcaaggttattacacgccttgatgaacaacaatgtttcaagagggaattgtttccttggtgtt |
106 |
Q |
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| T |
1704217 |
aaatatgtaccaataacttctgcagttaccttttgtatcaaggttattacacgccttgatgaacaacaatgtttcaagagggaattgtttccttggtgtt |
1704316 |
T |
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| Q |
107 |
tgattgccattgatgctatatattttctcaactcacatgtagttggagagataggtgcattgtgtgtgtctatgtgtatatatagatataagaagaagaa |
206 |
Q |
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| T |
1704317 |
tgattgccattgatgctatatattttctcaactcacatgtagttggagagataggtgcattgtgtgtgtctatgtgtatatatagacataagaagaagaa |
1704416 |
T |
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| Q |
207 |
gaag |
210 |
Q |
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|||| |
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| T |
1704417 |
gaag |
1704420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 268 - 577
Target Start/End: Original strand, 1704481 - 1704793
Alignment:
| Q |
268 |
taggtcatttggag--ggagtgatataagagataaggtgatgtctatgttcgactactctactaacattcattataaatt-atttgtcnnnnnnnnnnnn |
364 |
Q |
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| T |
1704481 |
taggtcatttggagagggagtgatataagagataaggtgatgtctatgttcgactactctactaacattcattataaatttatttgtcaaaataaaaata |
1704580 |
T |
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| Q |
365 |
nnnnnctcattataaattttatataatcaattctttcnnnnnnnggtaatatcattatagccacttctacacatttattgttaaaacatagatattttta |
464 |
Q |
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| T |
1704581 |
aaaaattcattataaattttatataatcaattctttctttttttggtaatatcattatagctacttctacacatttatcgttaaaacatagatattttta |
1704680 |
T |
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| Q |
465 |
ttttgtgtgaagctcgtgtttttctaacttcaattttgtttaattcaaaaacgatttcgtgccctaatttctaacatatagttatattaaaagagtagtg |
564 |
Q |
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| T |
1704681 |
ttttgtgtgaagctcgtgtttttctaacttcaattttatttaattcaaaaacaatttcgtgccctaatttctaatgtataattctattaaaagagtagtg |
1704780 |
T |
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| Q |
565 |
tttgcttgaaaca |
577 |
Q |
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| T |
1704781 |
tttgcttgaaaca |
1704793 |
T |
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