View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4807-Insertion-5 (Length: 354)
Name: NF4807-Insertion-5
Description: NF4807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4807-Insertion-5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 51404927 - 51405280
Alignment:
| Q |
1 |
cccatgacagccatttctgctctcagcaacatccatgaagatatttgtactagtgctcatcaaaagcgtgcctcgataatactccttccattccataaac |
100 |
Q |
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| T |
51404927 |
cccatgacagccatttctgctctcagcaacatccatgaagatatttgtactagtgctcatcaaaagcgtgcctcgataatactccttccattccataaac |
51405026 |
T |
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| Q |
101 |
accagcgtatcgatggaacgatggagtcattaggacattcatttcatgtaatgaatgagctcgtgttgagtcatgcaccttgttctgttggaattttgat |
200 |
Q |
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| T |
51405027 |
accagcgtatagatggaacgatggagtcattaggacattcatttcatgtaatgaatgagcttgtgttgagtcatgcaccttgttctgttggaattttgat |
51405126 |
T |
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| Q |
201 |
tgatcgcggtctcggaggaacaagtcaagttcaagcaagtgaagtttcctttaaggttgctgtaatcttcttcggaggacgcgacgatcatgaagcactt |
300 |
Q |
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| T |
51405127 |
tgatcgcggtctcggaggaacaagtcaagttcaagcaagtgaagtttcctttaaggttgttgtaatcttcttcggaggacgcgacgatcatgaagcactt |
51405226 |
T |
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| Q |
301 |
gcttatggtatgagaatggcagaacatccaggaattttactccatgttgttaag |
354 |
Q |
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| T |
51405227 |
gcttatggtatgagaatggcagaacatccaggaattttactccatgttgttaag |
51405280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 342
Target Start/End: Complemental strand, 29981768 - 29981430
Alignment:
| Q |
4 |
atgacagccatttctgctctcagcaacatccatgaagatatttgtactagtgctcatcaaaagcgtgcctcgataatactccttccattccataaacacc |
103 |
Q |
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|||||||| ||||| |||||| ||||| |||||||| |||||| | ||||| || |||||||| | |||| || || ||||| || || ||||||| |
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| T |
29981768 |
atgacagcaatttcatctctcaataacattcatgaagacatttgttcaagtgcacaccaaaagcgagttgcgatgattctacttccgtttcacaaacacc |
29981669 |
T |
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| Q |
104 |
agcgtatcgatggaacgatggagtcattaggacattcatttcatgtaatgaatgagctcgtgttgagtcatgcaccttgttctgttggaattttgattga |
203 |
Q |
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| || | |||||||| ||||| |||||||| || || |||| |||||||||| || || | || ||||| ||||| || |||||||||||| |||| |
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| T |
29981668 |
aacgagttgatggaactatggaatcattagggcactcgtttcgcgtaatgaatggacttgtacttagccatgctccttgctcggttggaattttggttga |
29981569 |
T |
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| Q |
204 |
tcgcggtctcggaggaacaagtcaagttcaagcaagtgaagtttcctttaaggttgctgtaatcttcttcggaggacgcgacgatcatgaagcacttgct |
303 |
Q |
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||| || || ||||| |||| |||||| || || ||||| ||||| | || |||| |||| ||||| |||||| | || |||| ||||||||||| |
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| T |
29981568 |
tcgtggccttggagggacaactcaagtccatgctagtgatgtttcttacaatgttgttgtagctttctttggaggatgtgatgatcgagaagcacttgcg |
29981469 |
T |
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| Q |
304 |
tatggtatgagaatggcagaacatccaggaattttactc |
342 |
Q |
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| T |
29981468 |
tacggtatgagaatagcagaacatcctggaatttcactc |
29981430 |
T |
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