View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4807_high_1 (Length: 460)
Name: NF4807_high_1
Description: NF4807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4807_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 779111 - 779534
Alignment:
| Q |
1 |
agtttatgaaaacagtttatagacgtaacttattttggtacactcatacgaaaaaatttaacttcactttatcttttactttagacatagcttatataca |
100 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
779111 |
agtttatgaaaacagtttatagacatatcttattttggtacactcatacgaaaaaatttaacttcactttatcttttactatagacttagcttatataca |
779210 |
T |
|
| Q |
101 |
taagcgtttatgctatgagctgcaactaaggtgtttatccaaacatgaccaatatataaatatgtcaagacatgtgttttcaaacacattacatgttgtg |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
779211 |
taagtgtttatgctatgagctgcaactaaggtgtttatccaaacatgaccaatatataaatatgtcaagacatgtgttttcaaacacattacatgttgtg |
779310 |
T |
|
| Q |
201 |
gcaacacatgactagatgcatgtgtaaaataataattttacaccgactgtgcatatataaagggatataaaagagtggatttgaatgtaacctcttccca |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
779311 |
gcaacacatgattagatgcatgtgtaaaataataattttacatcgacaacgcatatataaagggatataaaagagtggatttgaatgtaacctcttccca |
779410 |
T |
|
| Q |
301 |
tttagtttgaagttccaaaagctcttgacagtaatgaagacattcaacatgatatgcagcagctaagtctttgatcaaagcttttcttttgatgatacca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
779411 |
tttagtttgaagttccaaaagctcttgacagtaatgaagacattcattatgatatgcaacagctaagtctttgatcaaagcttttcttttgatgatacca |
779510 |
T |
|
| Q |
401 |
accacttcaattaattaaaaatta |
424 |
Q |
| |
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||||||||||||||| |||||||| |
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| T |
779511 |
accacttcaattaatcaaaaatta |
779534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 1074121 - 1074073
Alignment:
| Q |
55 |
aatttaacttcactttatcttttactttagacatagcttatatacataa |
103 |
Q |
| |
|
|||||||||||| | ||||||||||| |||| ||||||||||||||||| |
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|
| T |
1074121 |
aatttaacttcattgtatcttttactatagaaatagcttatatacataa |
1074073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 15349140 - 15349198
Alignment:
| Q |
175 |
tgttttcaaacacattacatgttgtggcaacacatgactagatgcatgtgtaaaataat |
233 |
Q |
| |
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||||||||||||||||||| | |||||||||| |||| | ||||||| |||||||||| |
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|
| T |
15349140 |
tgttttcaaacacattacaagatgtggcaacaaatgattgtatgcatgcgtaaaataat |
15349198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 41505604 - 41505558
Alignment:
| Q |
99 |
cataagcgtttatgctatgagctgcaactaaggtgtttatccaaaca |
145 |
Q |
| |
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||||||||||| |||||| |||||||| |||| |||||||||||||| |
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|
| T |
41505604 |
cataagcgtttgtgctataagctgcaaataagctgtttatccaaaca |
41505558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 27820484 - 27820529
Alignment:
| Q |
100 |
ataagcgtttatgctatgagctgcaactaaggtgtttatccaaaca |
145 |
Q |
| |
|
||||||| ||||||||| |||||||| |||| |||||||||||||| |
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|
| T |
27820484 |
ataagcgcttatgctataagctgcaaataagttgtttatccaaaca |
27820529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 18865204 - 18865249
Alignment:
| Q |
100 |
ataagcgtttatgctatgagctgcaactaaggtgtttatccaaaca |
145 |
Q |
| |
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|||||||||| |||||| |||||||| |||| |||||||||||||| |
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|
| T |
18865204 |
ataagcgtttgtgctataagctgcaaataagttgtttatccaaaca |
18865249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 7428947 - 7428911
Alignment:
| Q |
197 |
tgtggcaacacatgactagatgcatgtgtaaaataat |
233 |
Q |
| |
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|||| |||||||||| ||||||||||||||||||||| |
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|
| T |
7428947 |
tgtgacaacacatgaatagatgcatgtgtaaaataat |
7428911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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