View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4807_high_3 (Length: 350)
Name: NF4807_high_3
Description: NF4807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4807_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 7 - 299
Target Start/End: Original strand, 46667458 - 46667749
Alignment:
| Q |
7 |
tttggtgttgtgatgcagtttcatttaggctctttgacttgaatgataatggctttatagagcgacaagaggtaaatattatcgaaagtttattatttgt |
106 |
Q |
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| T |
46667458 |
tttggtattgtgatgcagtttcatttaggctctttgacttgaatgataatggctttatagagcgacaagaggtaaatattattgaaagtt-attatttgt |
46667556 |
T |
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| Q |
107 |
ttgttcatagaaattcaataaaaatgaattaaatttaatctatcataannnnnnnngcaaagggataattttggtggtcctctttctaatttgataggtc |
206 |
Q |
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| T |
46667557 |
ttgttcatagaaattcaataaaaatgaattaaatttaatctatcataattttttttgcaaagggataattttggtggtcctctttctaatttgataggtc |
46667656 |
T |
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| Q |
207 |
aagcacgtggttattgcaactgttgacgagcttgaacttggtgtgaatgatgaggcaatagaagcacttctagacaaggtgttatgtttgtga |
299 |
Q |
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| T |
46667657 |
aagcacgtggttattgcaactgttgacgagcttgaacttggtgtgaatgatgaggcaatagaagcacttctagacaaggtgttatgtttgtga |
46667749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 350
Target Start/End: Original strand, 46667768 - 46667800
Alignment:
| Q |
318 |
cacaaatttcttagatagtattacatttgaaag |
350 |
Q |
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| T |
46667768 |
cacaaatttcttagatagtattacatttgaaag |
46667800 |
T |
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