View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4808_high_13 (Length: 335)
Name: NF4808_high_13
Description: NF4808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4808_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 7126704 - 7126384
Alignment:
| Q |
1 |
agctcttgcaaccagctaaggagaatcgaaggagccgttacataattccaccacatatttgcataaatcttgacgtgtttaacagaactaggattgtttc |
100 |
Q |
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| T |
7126704 |
agctcttgcaaccagctaaggagaatcgaaggagcagttacataattccaccacatatttgcataaatcttgacgtgtttaacagaactaggattgtttc |
7126605 |
T |
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| Q |
101 |
ctgatagtatctcgaaaggtgtaccgacaaaagcaaaagtacaaagacctggcgtcaataactcaattttgcagtggtttttcttgggttcataatatac |
200 |
Q |
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| T |
7126604 |
ctgatagtatctcgaaaggtgtaccgacaaaagaaaaagtacaaagacctggcgttgataactcaattttgcagtagtttttcttgggttcataatatac |
7126505 |
T |
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| Q |
201 |
ttgtatttttaatttgacaagcgtggtacttgatatgtatagattttgttcaccaataatttcaaaattagaaatcatcaaactattcaatcttggatac |
300 |
Q |
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| T |
7126504 |
ttgaatttttaatttgacaagcgtggtacttgatatgtatagattttgttcaccaataatttcaaaattagaaatcatcaaactattcaatcttggatac |
7126405 |
T |
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| Q |
301 |
gctgaaaaaggctcggctcca |
321 |
Q |
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| T |
7126404 |
gctgaaaaaggctcggctcca |
7126384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 7119339 - 7119253
Alignment:
| Q |
204 |
tatttttaatttgacaagcgtggtacttgatatgtatagattttgttcaccaataatttcaaaattagaaatcatcaaactattcaa |
290 |
Q |
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| T |
7119339 |
tatttctaatttgtccagcgtggtacttgatatggatagattttgttccccaagaattttaaaatcagaaagcatcaaactattcaa |
7119253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 290
Target Start/End: Original strand, 7103778 - 7103864
Alignment:
| Q |
204 |
tatttttaatttgacaagcgtggtacttgatatgtatagattttgttcaccaataatttcaaaattagaaatcatcaaactattcaa |
290 |
Q |
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| T |
7103778 |
tattgttaattttacaagcgtgatacttgatatgcatagattttgttcacccaaaattttagaacaagaaatcctcaaacttttcaa |
7103864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 7103676 - 7103741
Alignment:
| Q |
105 |
tagtatctcgaaaggtgtaccgacaaaagcaaaagtacaaagacctggcgtcaataactcaatttt |
170 |
Q |
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| T |
7103676 |
tagtatctgaaaaggagtaccgacaaaaacaaaggaacaaagacttggcgtagataactcaatttt |
7103741 |
T |
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