View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4808_high_2 (Length: 557)
Name: NF4808_high_2
Description: NF4808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4808_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Complemental strand, 29431261 - 29430720
Alignment:
| Q |
1 |
ttcaagttgtaattgaatgcttcaattcaagacgacctgcataggtcgttgatgtttacnnnnnnnnnggcaagggcgaatagttgaatcaattggaaaa |
100 |
Q |
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| T |
29431261 |
ttcaagttgtaattgaatgcttcaattcaagacgacctgcataggtcgttgatgtttacaaaaaaaaaggcaagggcggatagttgaatcaattggaaaa |
29431162 |
T |
|
| Q |
101 |
taaccttgatatttatgatagttcccatagttttggtagttaaataagccttttatgtcttgttcatcctcacattgtatatttctattaagaggtaaga |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29431161 |
taaccttgatgtttatgatagttcccatagttttggtagttaaataagccttttatgtcttgttcatcctcacattgtatatttctattaagaggtgaga |
29431062 |
T |
|
| Q |
201 |
aaaaagagagattgtctaactcttgttattcttgggtattggttaggttggaagaactaaggtcagaattgggggaatggcaaaaggttctggaatgatc |
300 |
Q |
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| T |
29431061 |
aaaaagagagattgtctaactcttgttattcttgggtattggttaggttggaagaactaaggtcagaattgggggaatggcaaaaggttctggaatgatc |
29430962 |
T |
|
| Q |
301 |
cacccaaatatggctaccatgctcggggtatgttttacttgatgctttcatgtttcgtatatatggattttcgagtccatttttctaactaaatccacgc |
400 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29430961 |
cacccaaatatggctaccatgctcggggtatgtcttacttgatgctttcatgttttgtatatatggattttcgagtccatttttctaactaaatccacgc |
29430862 |
T |
|
| Q |
401 |
taggtaataacaactgatgccggggtaaccagtgacgtttggagaaagatggttcaggttgctgttaatcgaagcttcaaccagataactgtatgttatg |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29430861 |
taggtaataacaactgatgccggggtaaccagtgacgtttggagaaagatggttcaggttgctgttaatcgaagcttcaaccagataactgtatgttatt |
29430762 |
T |
|
| Q |
501 |
tcattcttttttgtagactgcaaattcagttaatggcatagt |
542 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
29430761 |
tcattcttttttgtagactgcaaattcagttaatggcatagt |
29430720 |
T |
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