View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4808_high_3 (Length: 494)
Name: NF4808_high_3
Description: NF4808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4808_high_3 |
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| [»] chr3 (5 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0380 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 470; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 13219761 - 13219268
Alignment:
| Q |
1 |
atcatcatggacataaagtcccaaagtatggaaccccagaaataggctggcccaacttaaatgggatatgatagcttctttgtgctctaacattcttgcc |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13219761 |
atcattatggacataaagtcccaaagtatggaaccccagaaataggctggcccaacttaaatgggatatgatagcttctttgtgctctaacattcttgcc |
13219662 |
T |
|
| Q |
101 |
aatacattatcctcattctgttcgggattataatcgcgaataaaaaatatcgctccatgagcaaaagcccctgtcataataaagcctgcaatgtattgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13219661 |
aatacattatcctcattctgttcgggattgtaatcccgaataaaaaatatcgctccatgagcaaaagcccctgtcataataaatcctgcaatgtattgat |
13219562 |
T |
|
| Q |
201 |
gatgagtatataacgcagcttgagtagtaaagtcttgtgctataaacgcataagcaggcaaagagtacatgtgttgagctaccaaagaagtaatgacccc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13219561 |
gatgagtatataacgcagcttgagtagtaaagtcttgtgctataaacgcataagcaggcaaagagtacatgtgttgagctaccaaagaagtaatgacccc |
13219462 |
T |
|
| Q |
301 |
taatgaggctagagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtccacgccccaatctaccccccggaggaata |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13219461 |
taatgaggctagagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtccacggcccaatctaccccccggaggaata |
13219362 |
T |
|
| Q |
401 |
tgtgcttctaaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaat |
494 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13219361 |
tgtgcttctaaaatatcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaat |
13219268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 47842150 - 47842098
Alignment:
| Q |
185 |
cctgcaatgtattgatgatgagtatataacgcagcttgagtagtaaagtcttg |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47842150 |
cctgcaatgtattgatgatgagtatataacgcagtttgagtagtaaagtcttg |
47842098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 443 - 494
Target Start/End: Complemental strand, 13217095 - 13217044
Alignment:
| Q |
443 |
ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaat |
494 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
13217095 |
ttagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaat |
13217044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 47842226 - 47842174
Alignment:
| Q |
190 |
aatgtattgatgatgagtatataacgcagcttgagtagtaaagtcttgtgcta |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
47842226 |
aatgtattgatgatgagtatataacgcagcttgagtagtaaaatcctgtgcta |
47842174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 47842288 - 47842228
Alignment:
| Q |
109 |
atcctcattctgttcgggattataatcgcgaataaaaaatatcgctccatgagcaaaagcc |
169 |
Q |
| |
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||||||||||| ||||||||| |||| |||||||| ||||||||||||| |||||||||| |
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| T |
47842288 |
atcctcattctattcgggattgcaatctcgaataaagaatatcgctccataagcaaaagcc |
47842228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 494
Target Start/End: Original strand, 237958 - 238441
Alignment:
| Q |
11 |
acataaagtcccaaagtatggaaccccagaaataggctggcccaacttaaatgggatatgatagcttctttgtgctctaacattcttgccaatacattat |
110 |
Q |
| |
|
|||||||| ||||| |||||||| || ||||| ||||| |||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
237958 |
acataaaggcccaaggtatggaatcctagaaagaggctagcccaacttaaatgagatatgatagcttctttatggtctaacattcttgccaatacattat |
238057 |
T |
|
| Q |
111 |
cctcattctgttcgggattataatcgcgaataaaaaatatcgctccatgagcaaaagcccctgtcataataaagcctgcaatgtattgatgatgagtata |
210 |
Q |
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||||||||||||| ||||| ||||| | ||| ||||| || |||||||||||||||||||||||||| || || || ||||| ||||| ||||||||||| |
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| T |
238058 |
cctcattctgttccggattgtaatccctaatgaaaaaaatagctccatgagcaaaagcccctgtcatgatgaaccccgcaatatattggtgatgagtata |
238157 |
T |
|
| Q |
211 |
taacgcagcttgagtagtaaagtcttgtgctataaacgcataagcaggcaaagagtacatgtgttgagctaccaaagaagtaatgacccctaatgaggct |
310 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| || ||||||| ||| ||||||||||| ||||||||||| || |||||||| |||||||| || ||| |
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| T |
238158 |
taaagcagcttgagtagtaaagtcttgtgctatgaatgcataaggaggtaaagagtacatatgttgagctactaaggaagtaataacccctaaagaagct |
238257 |
T |
|
| Q |
311 |
agagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtccacgccccaatctaccccccggaggaatatgtgcttcta |
410 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||| ||||||||||||||||| |||||||| |||||||| |||| ||||||||||||| |||| ||||||| |
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| T |
238258 |
agagcaagacctaactgaaaatgaatcgaattgttgattgtgtcataaaggcccttatgcccacgccctaatcgaccccccggaggagtatgcgcttcta |
238357 |
T |
|
| Q |
411 |
aaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaat |
494 |
Q |
| |
|
||| ||||| |||||||||||||| ||||||||||||| |||||| ||||| ||||||||||||| || |||||||||||||| |
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|
| T |
238358 |
aaagatctttaatactgtgcccaattccgaagttagttcgatacatgtgaccggcaatgagaaaaataaatgcaatagctaaat |
238441 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 10996671 - 10996334
Alignment:
| Q |
1 |
atcatcatggacataaagtcccaaagtatggaaccccagaaataggctggcccaacttaaatgggatatgatagcttctttgtgctctaacattcttgcc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
10996671 |
atcattatggacataaagtcccaaagtatggaaccctagaaataggatggctcaacttaaatgggatatgatagcttctttgtgctctaacatc--tgcc |
10996574 |
T |
|
| Q |
101 |
aatacattatcctcattctgttcgggattataatcgcgaataaaaaatatcgctccatgagcaaaagcccctgtcataataaagcctgcaatgtattgat |
200 |
Q |
| |
|
|||||||||| |||||| ||||||||||| ||||| | |||||||| ||||| ||||||||||||||| | |||||||||||| ||||||||| |||||| |
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|
| T |
10996573 |
aatacattattctcattatgttcgggattgtaatctcaaataaaaa-tatcgttccatgagcaaaagctcatgtcataataaatcctgcaatgaattgat |
10996475 |
T |
|
| Q |
201 |
gatgagtatataacgcagcttgagtagtaaagtcttgtgctataaacgcataagcaggcaaagagtacatgtgttgagctaccaaagaagtaatgacccc |
300 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10996474 |
gatgagtatataccgcagcttgagctgtaaagtcttgcgctataaacgcataagtaggtaaagagtacatgtgttgagctaccaaagaagtaatgacccc |
10996375 |
T |
|
| Q |
301 |
taatgaggctagagcaaggcctaattgaaaatgaattgaat |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10996374 |
taatgaggctagagcaaggcctaattgaaaatgaattgaat |
10996334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 3065875 - 3065837
Alignment:
| Q |
188 |
gcaatgtattgatgatgagtatataacgcagcttgagta |
226 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
3065875 |
gcaatgtattgatgatgactatataaggcagcttgagta |
3065837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 407 - 494
Target Start/End: Original strand, 18176963 - 18177050
Alignment:
| Q |
407 |
tctaaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaat |
494 |
Q |
| |
|
|||||||| ||| |||||| || |||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
18176963 |
tctaaaatatctcttataccatgaccaataccccaattagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaat |
18177050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 18013446 - 18013484
Alignment:
| Q |
188 |
gcaatgtattgatgatgagtatataacgcagcttgagta |
226 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
18013446 |
gcaatgtattgatgatgactatataaggcagcttgagta |
18013484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 443 - 494
Target Start/End: Complemental strand, 39048001 - 39047950
Alignment:
| Q |
443 |
ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaat |
494 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
39048001 |
ttagttctatacatatgaccggtaatgagaaaaagaattgcaatagctaaat |
39047950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 494
Target Start/End: Original strand, 14541323 - 14541406
Alignment:
| Q |
411 |
aaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaat |
494 |
Q |
| |
|
|||| |||||||||| || |||||| | |||||||| ||||||||||||| ||||||||||||||||||||||||| |||| |
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|
| T |
14541323 |
aaatatcttttataccatgaccaatatcccagttagttttatacatatgaccgacaatgagaaaaagaattgcaatagcaaaat |
14541406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 299
Target Start/End: Original strand, 32566650 - 32566683
Alignment:
| Q |
266 |
tacatgtgttgagctaccaaagaagtaatgaccc |
299 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
32566650 |
tacatgtattgagctaccaaagaagtaatgaccc |
32566683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 443 - 491
Target Start/End: Complemental strand, 15723 - 15675
Alignment:
| Q |
443 |
ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagcta |
491 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
15723 |
ttagttctatacatatgactggcaatgtgaaaaagaattgcaatagcta |
15675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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