View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4808_high_4 (Length: 422)
Name: NF4808_high_4
Description: NF4808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4808_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 29 - 392
Target Start/End: Original strand, 27296979 - 27297342
Alignment:
| Q |
29 |
tcatcatctaaaggatcattatacttagtgtcttgccaccatactgaacctcttccatcaataatgccatttccctgaatagtaaatccaaccagttttg |
128 |
Q |
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| T |
27296979 |
tcatcatctaaaggatcattatactgagtgtcttgccaccatactgaacctcttccatcaaaaatgccatttccttgaatagtaaatccaaccagttttg |
27297078 |
T |
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| Q |
129 |
taaagtccaaccactgtaatagtcctctgccccaagcattggagtttgttggtgcaataatggttccatctacctgaaaaaatacacatccaaaatatga |
228 |
Q |
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| T |
27297079 |
taaagtccaaccactgtaatagtcctctgccccaagcattggagtttgttggtgcaataatggttccatctacctgaaaaaatacacatccaaaatatga |
27297178 |
T |
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| Q |
229 |
cttcgaacaccttggtgtagtagtaaacatggaggtgttaatagctgcacccttctctcatgtnnnnnnnntgttacctggaaaatgattctgggtttac |
328 |
Q |
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| T |
27297179 |
cttcgaacaccttggtgtagtagtaaatatggtggtgttaatagctgcacccttctctcatgtaaaaaaaatgttacctggaaaatgattctgggtttac |
27297278 |
T |
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| Q |
329 |
agtatgggcccgaaaaaacaatgggccccacatagaaggtgtaatctgctggaatgagcatggt |
392 |
Q |
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| T |
27297279 |
agtatgggcccgaaaaaacaatgggccccacatagaaggtgtaatctgctggaatgagcatggt |
27297342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 198
Target Start/End: Complemental strand, 14737306 - 14737167
Alignment:
| Q |
59 |
tcttgccaccatactgaacctcttccatcaataatgccatttccctgaatagtaaatccaaccagttttgtaaagtccaaccactgtaatagtcctctgc |
158 |
Q |
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| T |
14737306 |
tcttgccaccaaactgagcctcttccatcaatgacaccatttccttgaatggtaattccttctagttttgtgaattccagccactgtagtgttactccac |
14737207 |
T |
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| Q |
159 |
cccaagcattggagtttgttggtgcaataatggttccatc |
198 |
Q |
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| T |
14737206 |
tccaagcatttgggtttgttggagcaataattgtaccatc |
14737167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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