View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4808_high_6 (Length: 359)
Name: NF4808_high_6
Description: NF4808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4808_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 42730795 - 42730445
Alignment:
| Q |
1 |
ctaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacaccattgaatttgcattgcagatttaactgaagaaaccttaacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42730795 |
ctaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacaccattgaatttgcattgcagatttaactgaagaaaccttaacac |
42730696 |
T |
|
| Q |
101 |
aaaattcaggagtactagctcttggataatacacaacctcaaaagatcttccattaacagcacaatttacagcttcaacaacagattcagctcctacttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42730695 |
aaaattcaggagtactagctcttggataatacacaacctcaaaagatcttccattaacagcacaatttacagcttcaacaacagattcagctcctacttt |
42730596 |
T |
|
| Q |
201 |
tcccatcaaatcatcacaaccattttttctgttatcatttccacacaagaaaccagaaccaacaccaccaaacataggtgatacacggttccaagtacta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42730595 |
tcccatcaaatcatcacaaccattttttctgttatcatttccacacaagaaaccagaaccaacaccaccaaacaaaggtgatacacggttccaagtacta |
42730496 |
T |
|
| Q |
301 |
gaagaattagaaaactgatcagttccaccaccaattccacctttctctgct |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42730495 |
gaagaattagaaaactgatcagttccaccaccaattccacctttctttgct |
42730445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 28347390 - 28347329
Alignment:
| Q |
13 |
gaatcctcagtttcaaaaggcattttgaatctcataccagaacaccattgaatttgcattgc |
74 |
Q |
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|||||||| |||||||| | ||| |||||||| || |||||||||||| |||| |||||||| |
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| T |
28347390 |
gaatcctcggtttcaaaggccatcttgaatcttattccagaacaccatcgaatctgcattgc |
28347329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 21716325 - 21716183
Alignment:
| Q |
1 |
ctaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacaccattgaatttgcattgcagatttaactgaagaaaccttaacac |
100 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||| ||||| ||||| ||||||||||||||||| ||| |||| || || | ||| ||||||||| |
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| T |
21716325 |
ctaatcctagaagagtcttcagtttcaaagggcatcttgaacctcatcccagaacaccattgaatcctcatagcagccttcacagctgaagccttaacac |
21716226 |
T |
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| Q |
101 |
aaaattcaggagtactagctcttggataatacacaacctcaaa |
143 |
Q |
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| || |||||||| |||||||||||||| || ||||| ||||| |
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| T |
21716225 |
agaactcaggagtgctagctcttggatagtaaacaacttcaaa |
21716183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 40352112 - 40352254
Alignment:
| Q |
1 |
ctaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacaccattgaatttgcattgcagatttaactgaagaaaccttaacac |
100 |
Q |
| |
|
||||||||||||||||| || ||||| || ||||| || || ||||| |||||||||||||||||| ||| |||| |||||| | ||| ||||| || |
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| T |
40352112 |
ctaatcctagaagaatcttcggtttcgaatggcatcttaaacctcatcccagaacaccattgaattctcatagcagctttaacagctgaagtcttaatac |
40352211 |
T |
|
| Q |
101 |
aaaattcaggagtactagctcttggataatacacaacctcaaa |
143 |
Q |
| |
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|||| ||||||||||| ||||| |||||||| || |||||||| |
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| T |
40352212 |
aaaactcaggagtacttgctctaggataataaactacctcaaa |
40352254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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