View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4809-Insertion-1 (Length: 1007)
Name: NF4809-Insertion-1
Description: NF4809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4809-Insertion-1 |
 | |
|
| [»] scaffold1019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 662; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 224 - 977
Target Start/End: Complemental strand, 10514393 - 10513642
Alignment:
| Q |
224 |
gaatgcaatcatttttcatcaaagaagcaaatagtatcatctttgccagccatatatgtccctatattcatatgtatagtaaagtccagtaaacatttag |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||| || ||||||||||| |
|
|
| T |
10514393 |
gaatgcaatcatttttcatcaaagaagcaattagtatcatctttgc-agccatatatgtccctctattcatatgtatagtaaagtacaataaacatttag |
10514295 |
T |
|
| Q |
324 |
aatttgatctgataagtgattttttgagaaatctaaaagtttgatgagtatgtttgatcatcatgaactttgtacctaagtcaccatgagttaaactttc |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10514294 |
aatttgatctgataagtgattttttgagaaatctaaaagtttgatgagtatgtttgatcatcgtgaactttgtacctaagtcaccatgagttaaactttc |
10514195 |
T |
|
| Q |
424 |
aaattgcagatagaatcaaacttaaactttcaaattggaaggcaagtttgttatctatggcaggtagagtccagttggtgcaatctgttattcatagtat |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10514194 |
aaattgcagatagaatcaaacttaaactttcaaattggaaggcaagtttgttatctatggcaggtagagtccagttggtgcaatttgttattcatagtat |
10514095 |
T |
|
| Q |
524 |
gctaacctatagcatctctatttatgtctggcctgtttctcttctcaaagatcttgaaaaagagattaggaattttatttggagtggagacaaagacaaa |
623 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||| |
|
|
| T |
10514094 |
gctaacctatagtatctctatttatgcctggcctatttctcttctcaaagatcttgaaaaagagattaggaatttcatctagagtggagacaaagacaaa |
10513995 |
T |
|
| Q |
624 |
aggaaattaatttcagtctcttggaagaaggtgtgtagacattggaagcagggtggtttaaacttaaagatccttcataagtttgaatcaagctaccaac |
723 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
10513994 |
aggaaattaatttcagtctcttggaagaaggtgtgtagacattggaagcagggtggtttaaactt-aagatccctcataagtttgaatcaagctaccaac |
10513896 |
T |
|
| Q |
724 |
ttgaagctttgctggaatttgatcaactctcagaaaccttgtgcagctcttttgaaagatagagtcttgagaaacaacaaatctataaagcatcacatct |
823 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10513895 |
ttgaagctttgctggaatttgatcaactctcagaaaccttgggcaactcttttgaaggatagagtcttgagaaacaacaaatctataaagcatcacatct |
10513796 |
T |
|
| Q |
824 |
tctcttctttttggagcagtataaaagaagagtactcttgcattcaatctaactccatttggttgttaggcgatggtaaggatattagcttctggaatga |
923 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10513795 |
tctcttctttatggagcaatataaaagaagagtactcttgcattcaatctaactccatttggttgttaggcgatggtaaggatattagcttctggaatga |
10513696 |
T |
|
| Q |
924 |
cccttggtttggccaatctcttgcggatcttctcaacattcccgaagctactag |
977 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10513695 |
cccttggtttggccaatctcttgcgaatcttctcaacattcccgaagctactag |
10513642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 10515151 - 10514960
Alignment:
| Q |
11 |
cagacatggtctacgtgcaatggcaaggaagatgtatcgtacgagcctctgggatatgattccaaagcctgttgtggatgtgcctattccttctcttcct |
110 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10515151 |
cagacatggtctgcgtgcaatggcaaggaagatgtatcgtacgagcctctgggatatgactccaaatcctgttgtggatgtgcctattccttctcttcct |
10515052 |
T |
|
| Q |
111 |
cgaattcattcacctctagtggtgactcatgttatggctgagaggcttctctctcaactctgcatctcatcccaggttcctgcctaataaag |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10515051 |
cgaattcattcacctctagtggtgactcatgttatggctgagaggcttcgctctcaactctgcatctcatcccaggttcctgcctaataaag |
10514960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1019 (Bit Score: 227; Significance: 1e-124; HSPs: 1)
Name: scaffold1019
Description:
Target: scaffold1019; HSP #1
Raw Score: 227; E-Value: 1e-124
Query Start/End: Original strand, 425 - 679
Target Start/End: Complemental strand, 255 - 1
Alignment:
| Q |
425 |
aattgcagatagaatcaaacttaaactttcaaattggaaggcaagtttgttatctatggcaggtagagtccagttggtgcaatctgttattcatagtatg |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
255 |
aattgcagatagaatcaaacttaaactttcaaattggaaggcaagtttgttatctatggcaggtagagtccagttggtgcaatctgttattcatagtatg |
156 |
T |
|
| Q |
525 |
ctaacctatagcatctctatttatgtctggcctgtttctcttctcaaagatcttgaaaaagagattaggaattttatttggagtggagacaaagacaaaa |
624 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||| || |||||| ||||||||||||||| |
|
|
| T |
155 |
ttaacctatagcatctctatttatgcctggcctatttctcttctcaaagatcttgagaaagagattaggaatttcatctggagtagagacaaagacaaaa |
56 |
T |
|
| Q |
625 |
ggaaattaatttcagtctcttggaagaaggtgtgtagacattggaagcagggtgg |
679 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55 |
ggaaattaatttcagtctcttggaagaaggtgtgtagacattggaagcagggtgg |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University