View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4809-Insertion-10 (Length: 292)

Name: NF4809-Insertion-10
Description: NF4809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4809-Insertion-10
NF4809-Insertion-10
[»] chr3 (1 HSPs)
chr3 (6-292)||(50525889-50526174)


Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 6 - 292
Target Start/End: Original strand, 50525889 - 50526174
Alignment:
Q  6 caagtcaacattctaattaacaccccacagggattcaatgtctttggtgaccccatcatatgttagtgagttattggagagaggcttcactttaaacact 105  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50525889 caagtcaacattctaattaacaccccacagg-attcaatgtctttggtgaccccatcatatgttagtgagttattggagagaggcttcactttaaacact 50525987  T
Q  106 gttggaaacagactcttctattcagcacttccattgttgttgtggatctttggccctgttttggtcttcctttgttctctcaccatggttcctttgcttt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50525988 gttggaaacagactcttctattcagcacttccattgttgttgtggatctttggccctgttttggtcttcctttgttctctcactatggttcctttgcttt 50526087  T
Q  206 ataaccttgactttgtcatcactaagggaaagatggacccaaatcagaacacggattttgtttgagtttatacttttatgtctgttt 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50526088 ataaccttgactttgtcatcactaagggaaagatggacccaaatcagaacacggattttgtttgagtttatacttttatgtctgttt 50526174  T

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