View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4809-Insertion-17 (Length: 190)
Name: NF4809-Insertion-17
Description: NF4809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4809-Insertion-17 |
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| [»] scaffold0186 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 1e-67; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 8 - 154
Target Start/End: Original strand, 133146 - 133294
Alignment:
| Q |
8 |
ctaactaccaccttaatgtttgtacctagtttaagactatctca--atggaagaaaattacatctaagaagacaattgtgatattaaatacggtctctac |
105 |
Q |
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| T |
133146 |
ctaactaccaccttaatgtttgtacctagtttaagactatttcataatggaagaaaattacatctaagaagacaattgtgatattaaatacggtctctac |
133245 |
T |
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| Q |
106 |
ctattttaatcatataatattataatgtactaaattaactcaggttcct |
154 |
Q |
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| T |
133246 |
ctattttaatcatataatattataatgtactaagttaactcaggttcct |
133294 |
T |
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Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 18871129 - 18871220
Alignment:
| Q |
7 |
actaactaccaccttaatgtttgtacctagtttaagactatctc--aatggaagaaaattacatctaagaagacaattgtgatattaaatac |
96 |
Q |
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| T |
18871129 |
actaactactaccctaatgtttgtacctagttcatgactatttcttaatggaagaaaattaaatctaagaagaaaattgcgatattaaatac |
18871220 |
T |
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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 18872919 - 18872963
Alignment:
| Q |
51 |
aatggaagaaaattacatctaagaagacaattgtgatattaaata |
95 |
Q |
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| T |
18872919 |
aatggaagaaaattacatctaagaagaaaattatgatataaaata |
18872963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 45; Significance: 7e-17; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 4511 - 4602
Alignment:
| Q |
7 |
actaactaccaccttaatgtttgtacctagtttaagactatctc--aatggaagaaaattacatctaagaagacaattgtgatattaaatac |
96 |
Q |
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| T |
4511 |
actaactattaccctaatgtttgtacctagttcatgactattttctaatggaagaaaattacgtctaagaagaaaattgtgatattaaatac |
4602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 28732249 - 28732173
Alignment:
| Q |
21 |
taatgtttgtacctagtttaagactatctca--atggaagaaaattacatctaagaagacaattgtgatattaaata |
95 |
Q |
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| T |
28732249 |
taatgtttgtacctagttcatgactatttcataatggaaggaaattacatccaagaagaaatttgtgatattaaata |
28732173 |
T |
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