View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4809-Insertion-2 (Length: 678)
Name: NF4809-Insertion-2
Description: NF4809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4809-Insertion-2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 355 - 678
Target Start/End: Complemental strand, 27439786 - 27439463
Alignment:
| Q |
355 |
tgtacaagcactcccgcacgtggccctaaaactcagttcgtctctcacttgaaacctcactcactcccgccgcgcaagccgtcacagcacgctatgtcag |
454 |
Q |
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| T |
27439786 |
tgtacaagcactcccgcacgtggccctaaaactcagttcgtctctcacttgaaacctcactcactcccgccgcgcaagccgtcacagcacgctatgtcag |
27439687 |
T |
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| Q |
455 |
attccatactttcatccataaaccttcccaaaaccttccacaccaaaattccactcatcaccaaccccatttccacaaccacaatcgctttcaaaccaaa |
554 |
Q |
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| T |
27439686 |
attccatactttcatccataaaccctcccaaaaccttccacaccaaaattccactcatcaccaaccccatttccacaaccacaatcgctttcaaaccaaa |
27439587 |
T |
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| Q |
555 |
caaattcaaaatcccaaccatgattcgcgcttcaacgacgcctaaacaaggtgaaattcaaccttcttttggagatactctcatcaacaacactcgcaaa |
654 |
Q |
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| T |
27439586 |
caaattcaaaatcccaaccatgatttgcgcttcaacgacgccaaaacaaggtgaaattcaaccttcttttggagatactctcatcaacaacactcgcaaa |
27439487 |
T |
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| Q |
655 |
caacaacttcttgaccccatcact |
678 |
Q |
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| T |
27439486 |
caacaacttctggaccccatcact |
27439463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 297
Target Start/End: Complemental strand, 27440091 - 27439802
Alignment:
| Q |
7 |
aaagatcacactaaggaagcgtcattgtcatccttttaaactaatattgaccaaatatagagaacatgattatcacttcgtcatcagtttaaagtttcat |
106 |
Q |
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| T |
27440091 |
aaagatcacactaaggaggcgtcattgtcatccttttaaactaatattgaccaaatatagaaaacatggttatcacttcatcatcagtttgaaatttcat |
27439992 |
T |
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| Q |
107 |
ccaatcgaatcaaatgcgttcatatgagtcgatcgacatgtgaagatactcaacaccatccaccgttctcgtgtccctatgattttgacaacctttaatc |
206 |
Q |
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| T |
27439991 |
ccaatcgaatcaaatgcgttc--atgagtcaattgacaggtgaagatactcaacaccatccaccgttctcgtgtctctacgattgtgacaacctttaatc |
27439894 |
T |
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| Q |
207 |
tagttcaattgatc-ttcaaacccgacaatataactaatgataaacaagtacttttctttagagggataaataagtagttattcaatatgtc |
297 |
Q |
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| T |
27439893 |
tagtccaattgatctttcaaacgagacaatataactaatgataaacaagtacttttcattagagggataaataagtacttattcaatatgtc |
27439802 |
T |
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