View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4809-Insertion-20 (Length: 630)
Name: NF4809-Insertion-20
Description: NF4809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4809-Insertion-20 |
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| [»] chr1 (12 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 580; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 7 - 630
Target Start/End: Complemental strand, 32896490 - 32895868
Alignment:
| Q |
7 |
atatgtctcatacgatactgataaccatgtaatttaatggatttgtctaaatggccacctaggttgtataattctggtctagactaaacttttgtcttgt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32896490 |
atatgtctcatacgatactgataaccatgtaatttaatggatttgtctaaatggccacctaggttgtataattctggtctagactaaacttttgtcttgt |
32896391 |
T |
|
| Q |
107 |
aaaacaggtagcttaaaacaaactttatgaagccttgttttacacaaagcgtttacattatagccagaataaacctcatatcctcaagttgtgcaaattt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32896390 |
aaaacaggtagcttaaaacaaactttatgaagccttgttttacacaaagcgtttacattatagccagaataaacctcaaatcctcaagttgtgcaaattt |
32896291 |
T |
|
| Q |
207 |
tatcatatgcacaattggatgtacattgtacatctctgctaccttaccagctaaagatacttgctatattctgcattcttctacgtctccgtctccgcta |
306 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32896290 |
tatcatatgcacacttggatgtacattgtacatctctgctaccttaccagctaaggatgcttgctatattctgcattcttctacgtctccgtctccacta |
32896191 |
T |
|
| Q |
307 |
ttgtactgccttttaactttggtcttgatatcaacctctttgtcaccttctttaccccacagtaacaaatatagacccatgatgacaataaaaccaccta |
406 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32896190 |
ttgtactgccttttaactttggtcttgatatcaacatctttgtcaccttctttaccccacagcaacaaatatagacccatgatgacaataaaaccaccta |
32896091 |
T |
|
| Q |
407 |
tgatgctgaagatttgatgagaagcaagttacttttcgaagaaaaacgtgaccactaactacatattcatagttgtaatttttagaagagcttaacattg |
506 |
Q |
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| T |
32896090 |
tgatgctgaagatttgatgagaagcaagttacttttcgaagaaaaacgtgaccactaactacgtattcatagttgtaatttttagaagagcttaacattg |
32895991 |
T |
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| Q |
507 |
atacattgtcggtgtaaacaagtttacctgcccagataaagtttttcaccaaggacgaagtacgctagaattgtcacaaatatggtactaagagggttaa |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32895990 |
atacattgtcggtgtaaacaagtttacctgcccagataaagtttttcaccaaggacgaagtaagctagaattgtcacaaatatggtactaagagggttaa |
32895891 |
T |
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| Q |
607 |
acattgtgacaaaaaactggccct |
630 |
Q |
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| T |
32895890 |
acattgtgaca-aaaactggccct |
32895868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 434 - 621
Target Start/End: Complemental strand, 32919463 - 32919276
Alignment:
| Q |
434 |
gttacttttcgaagaaaaacgtgaccactaactacatattcatagttgtaatttttagaagagcttaacattgatacattgtcggtgtaaacaagtttac |
533 |
Q |
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|||| ||||| |||||||||||| | ||| ||||| ||||||||||||||| |||||||||| ||||| |||||||||||||| ||||||||| ||||| |
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| T |
32919463 |
gttatttttctaagaaaaacgtgtctactgactacgtattcatagttgtaacatttagaagagtttaactttgatacattgtcgatgtaaacaaatttac |
32919364 |
T |
|
| Q |
534 |
ctgcccagataaagtttttcaccaaggacgaagtacgctagaattgtcacaaatatggtactaagagggttaaacattgtgacaaaaa |
621 |
Q |
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||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32919363 |
ctgcccaaataaagtttttcaccaaagacgaagtatgctagaattgtcacaaatatggtacaaagagggttaaacattgtgacaaaaa |
32919276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 486 - 630
Target Start/End: Complemental strand, 32953049 - 32952906
Alignment:
| Q |
486 |
ttttagaagagcttaacattgatacattgtcggtgtaaacaagtttacctgcccagataaagtttttcaccaaggacgaagtacgctagaattgtcacaa |
585 |
Q |
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||||||||||| ||||| ||||||||||||| || ||||||| |||||||||||| ||||||||||||||||| ||||||||| |||||||||| ||||| |
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| T |
32953049 |
ttttagaagagtttaactttgatacattgtcagtctaaacaaatttacctgcccaaataaagtttttcaccaaagacgaagtatgctagaattgccacaa |
32952950 |
T |
|
| Q |
586 |
atatggtactaagagggttaaacattgtgacaaaaaactggccct |
630 |
Q |
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|||| |||| |||||||||||||| ||||||| |||||||||||| |
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| T |
32952949 |
atatagtacaaagagggttaaacactgtgaca-aaaactggccct |
32952906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 325 - 426
Target Start/End: Complemental strand, 32919604 - 32919503
Alignment:
| Q |
325 |
ttggtcttgatatcaacctctttgtcaccttctttaccccacagtaacaaatatagacccatgatgacaataaaaccacctatgatgctgaagatttgat |
424 |
Q |
| |
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|||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||| || |
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| T |
32919604 |
ttggtcttgaaatcaacatctttgtcaccttctttaccccacagcaacaaatatagacccacgatgacaataaaaccacctatgatgctgaaaatttaat |
32919505 |
T |
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| Q |
425 |
ga |
426 |
Q |
| |
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|| |
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| T |
32919504 |
ga |
32919503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 485 - 621
Target Start/End: Complemental strand, 32885309 - 32885173
Alignment:
| Q |
485 |
tttttagaagagcttaacattgatacattgtcggtgtaaacaagtttacctgcccagataaagtttttcaccaaggacgaagtacgctagaattgtcaca |
584 |
Q |
| |
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|||||||||||| ||||| || ||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
32885309 |
tttttagaagagtttaactttaatacattgttactgtaaaaagttttacctgcccagataaagtttttcaccaaggacgaagtatgctagaattgccaca |
32885210 |
T |
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| Q |
585 |
aatatggtactaagagggttaaacattgtgacaaaaa |
621 |
Q |
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| T |
32885209 |
aatatggtacaaagagggttaaatacagtgacaaaaa |
32885173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 268 - 418
Target Start/End: Complemental strand, 32885509 - 32885359
Alignment:
| Q |
268 |
tgctatattctgcattcttctacgtctccgtctccgctattgtactgccttttaactttggtcttgatatcaacctctttgtcaccttctttaccccaca |
367 |
Q |
| |
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|||||||||| |||||||||| | |||| ||||| | ||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
32885509 |
tgctatattcaacattcttctaagcctccttctccatttttgtactgcaatttaactttggtcttgaaatcaacctctttgtcaccttctttcccccaca |
32885410 |
T |
|
| Q |
368 |
gtaacaaatatagacccatgatgacaataaaaccacctatgatgctgaaga |
418 |
Q |
| |
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| |||| ||| | ||||||||| |||||||| ||||||||||||| |||| |
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| T |
32885409 |
gcaacagatacaaacccatgatcacaataaatgcacctatgatgctaaaga |
32885359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 32885692 - 32885583
Alignment:
| Q |
46 |
gatttgtctaaatggccacct-aggttgtataattctggtctagactaaacttttgtcttgtaaaacaggtagcttaaaacaaactttatgaagccttgt |
144 |
Q |
| |
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||||||||||||||||||| | ||||| || ||||||||| ||||||||| |||||||||||||||| |||||| |||||||||||| ||||||||||| |
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| T |
32885692 |
gatttgtctaaatggccacattaggttataaaattctggtatagactaaatttttgtcttgtaaaactagtagctgaaaacaaactttgtgaagccttgt |
32885593 |
T |
|
| Q |
145 |
tttacacaaa |
154 |
Q |
| |
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|||||||||| |
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| T |
32885592 |
tttacacaaa |
32885583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 530 - 621
Target Start/End: Original strand, 19503754 - 19503845
Alignment:
| Q |
530 |
ttacctgcccagataaagtttttcaccaaggacgaagtacgctagaattgtcacaaatatggtactaagagggttaaacattgtgacaaaaa |
621 |
Q |
| |
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||||||||||| ||||||||||||||||||||| | || || ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
19503754 |
ttacctgcccaaataaagtttttcaccaaggacagaatatgccagaattgccacaaatatggtactaagagggttaaacattgtgacaaaaa |
19503845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 318 - 426
Target Start/End: Original strand, 19503529 - 19503637
Alignment:
| Q |
318 |
tttaactttggtcttgatatcaacctctttgtcaccttctttaccccacagtaacaaatatagacccatgatgacaataaaaccacctatgatgctgaag |
417 |
Q |
| |
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|||| |||||||||||| |||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||||| |||| || |||||||| |
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| T |
19503529 |
tttacctttggtcttgaaatcaacctctctgtcaccttctttcccccacagtaacaagtatagtcccatgatgacaataagtgcaccgatcatgctgaaa |
19503628 |
T |
|
| Q |
418 |
atttgatga |
426 |
Q |
| |
|
|||| |||| |
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| T |
19503629 |
attttatga |
19503637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 325 - 416
Target Start/End: Complemental strand, 32935838 - 32935747
Alignment:
| Q |
325 |
ttggtcttgatatcaacctctttgtcaccttctttaccccacagtaacaaatatagacccatgatgacaataaaaccacctatgatgctgaa |
416 |
Q |
| |
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|||||||| | ||||| |||||||||||||||||| |||||||| |||||||| | |||||||||||||||||| ||||||||| |||||| |
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| T |
32935838 |
ttggtcttcaaatcaatctctttgtcaccttctttcccccacagcaacaaatacaaacccatgatgacaataaatgcacctatgaggctgaa |
32935747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 323 - 421
Target Start/End: Complemental strand, 32953234 - 32953136
Alignment:
| Q |
323 |
ctttggtcttgatatcaacctctttgtcaccttctttaccccacagtaacaaatatagacccatgatgacaataaaaccacctatgatgctgaagattt |
421 |
Q |
| |
|
|||||||||||| ||| ||| |||||||||||||||| |||||||| |||||||| | |||||||||||| ||||| ||||||| |||||||| |||| |
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|
| T |
32953234 |
ctttggtcttgaaatcgaccactttgtcaccttctttcccccacagcaacaaatacaaacccatgatgacgataaatgcacctataatgctgaaaattt |
32953136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 529 - 621
Target Start/End: Complemental strand, 32935624 - 32935532
Alignment:
| Q |
529 |
tttacctgcccagataaagtttttcaccaaggacgaagtacgctagaattgtcacaaatatggtactaagagggttaaacattgtgacaaaaa |
621 |
Q |
| |
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|||||||||||| ||||| |||||||||||||| ||||| |||||||||| ||||||||||||| |||||||||||| | ||| ||||||| |
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| T |
32935624 |
tttacctgcccaaataaaaattttcaccaaggacaaagtatgctagaattgccacaaatatggtagaaagagggttaaagactgtaacaaaaa |
32935532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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