View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4809-Insertion-3 (Length: 884)

Name: NF4809-Insertion-3
Description: NF4809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4809-Insertion-3
NF4809-Insertion-3
[»] scaffold0426 (2 HSPs)
scaffold0426 (32-404)||(3427-3801)
scaffold0426 (315-407)||(4548-4640)
[»] chr5 (12 HSPs)
chr5 (5-377)||(23136809-23137181)
chr5 (292-407)||(19827915-19828030)
chr5 (317-403)||(14575277-14575363)
chr5 (251-403)||(14062316-14062469)
chr5 (251-407)||(38226151-38226304)
chr5 (317-407)||(6037126-6037216)
chr5 (304-407)||(19831872-19831975)
chr5 (252-372)||(35891892-35892013)
chr5 (347-394)||(35891515-35891562)
chr5 (324-375)||(38225198-38225249)
chr5 (448-530)||(38226347-38226429)
chr5 (252-407)||(8588826-8588982)
[»] chr4 (13 HSPs)
chr4 (251-407)||(46867456-46867612)
chr4 (5-184)||(20446929-20447107)
chr4 (324-407)||(41982710-41982793)
chr4 (292-402)||(51537276-51537386)
chr4 (480-537)||(46867296-46867353)
chr4 (272-407)||(20447175-20447308)
chr4 (304-407)||(46868864-46868967)
chr4 (322-407)||(32839079-32839164)
chr4 (292-406)||(20445856-20445969)
chr4 (292-403)||(53807847-53807958)
chr4 (499-533)||(32838536-32838570)
chr4 (442-484)||(46867369-46867411)
chr4 (450-526)||(20445741-20445817)
[»] chr6 (4 HSPs)
chr6 (251-403)||(10457946-10458099)
chr6 (292-403)||(6421558-6421669)
chr6 (292-402)||(32056589-32056699)
chr6 (346-407)||(31374487-31374548)
[»] chr7 (5 HSPs)
chr7 (8-212)||(47303905-47304111)
chr7 (255-407)||(47304140-47304292)
chr7 (318-407)||(30332331-30332420)
chr7 (337-407)||(30335103-30335173)
chr7 (356-407)||(31544836-31544887)
[»] chr2 (2 HSPs)
chr2 (292-407)||(26510939-26511054)
chr2 (292-403)||(26511695-26511806)
[»] chr8 (5 HSPs)
chr8 (251-407)||(7001011-7001167)
chr8 (292-407)||(8085408-8085523)
chr8 (322-407)||(33136774-33136859)
chr8 (498-537)||(7001279-7001318)
chr8 (346-407)||(1745830-1745890)
[»] chr3 (8 HSPs)
chr3 (337-403)||(1724198-1724264)
chr3 (110-148)||(2127766-2127804)
chr3 (304-406)||(31313456-31313558)
chr3 (347-407)||(6454389-6454449)
chr3 (347-407)||(6761897-6761957)
chr3 (357-407)||(1542186-1542236)
chr3 (317-407)||(53114366-53114456)
chr3 (346-399)||(9829969-9830022)
[»] chr1 (5 HSPs)
chr1 (477-537)||(6394880-6394940)
chr1 (499-537)||(6396665-6396703)
chr1 (253-394)||(12664052-12664194)
chr1 (346-407)||(12664414-12664475)
chr1 (337-394)||(18342026-18342082)


Alignment Details
Target: scaffold0426 (Bit Score: 250; Significance: 1e-138; HSPs: 2)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 32 - 404
Target Start/End: Complemental strand, 3801 - 3427
Alignment:
Q  32 aactactcaacaaatatacatgaacaatcatgaaattcaaaactagtgaaatcacgaaataattatnnnnnnnn--cctgaaatgtggcgaaaatgaaga 129  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||          | ||||||||||||||||||||||    
T  3801 aactactcaacaaatatacatgaacaatcatgaaattcaaaaccagtgaaatcacgaaataattataaaaaaaaagcgtgaaatgtggcgaaaatgaaga 3702  T
Q  130 acatgtacctgatttgattacattaagattacaatggcataaccaaattaaaaga-tttgagcaaggtttaacctaagtgagatggaatcaaatcaaatt 228  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  3701 acatgtacttgatttgattacattaagattacaatggcataaccaaattaaaagagtttgagcaaggtttaac-taagtgagatggaatcaaatcaaatt 3603  T
Q  229 cttcacannnnnnnnnnnnnaccatttatttgatagtatcaatgatcaaatcgatatataagaaaataatttagggatcgatttggtggtgaatgacata 328  Q
    |||||||             ||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3602 cttcacatttattagtttttaccatttatttgacagtatcaatgatcaaattgatatataaaaaaataatttagggatcgatttggtggtgaatgacata 3503  T
Q  329 atttaagaaccaactttatttttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttca 404  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  3502 atttaagaaccaactttatttttaatgaataattcagagatcaatttgacaatgtaacaatttgtattgactttca 3427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 315 - 407
Target Start/End: Original strand, 4548 - 4640
Alignment:
Q  315 tggtgaatgacataatttaagaaccaactttatttttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttcattt 407  Q
    |||||| | |||||||| | ||| |||||| ||||||||||||||  |||| |||| ||| || ||||||||||||||| || ||||||||||    
T  4548 tggtgagtaacataattcaggaatcaacttaatttttaatgaatagctcagggatcaattcgacagtgtaacaatttgtgttaactttcattt 4640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 5e-40; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 5 - 377
Target Start/End: Complemental strand, 23137181 - 23136809
Alignment:
Q  5 acacaaagtagaataccttttcatagtaactactcaacaaatatacatgaacaatcatgaaattcaaaactagtgaaatcacgaaataattatnnnnnnn 104  Q
    |||||| ||| ||| | ||||||||| |||||||||||||| |||||||||||||||||||||||||||| | | |||||||||||||||||            
T  23137181 acacaatgtaaaatgcattttcatagcaactactcaacaaaaatacatgaacaatcatgaaattcaaaaccaataaaatcacgaaataattaaaaagaaa 23137082  T
Q  105 ncctgaaatgtggcgaaa----atga-----agaacatgtacctgatttgattacattaagattacaatggcataaccaaattaaaaga-tttgagcaag 194  Q
     | | |||||| | ||||    ||||     | ||||||| | ||||||||||||  |||||||| |||||| ||  ||||||| |||| ||||||||||    
T  23137081 ccgttaaatgtagtgaaaaatcatgaaattcaaaacatgtgcatgatttgattacggtaagattaaaatggcgtagacaaattagaagagtttgagcaag 23136982  T
Q  195 gtttaacctaagtgagatggaatcaaatcaaattcttcacannnnnnnnnnnnnaccatttatttgatagtatcaatgatcaaatcgatatataaga-aa 293  Q
    |||||||||||||||||||| ||| |||||| |||||||||             | ||||||||||| |||||||   ||||||| |||| ||| || ||    
T  23136981 gtttaacctaagtgagatgggatcgaatcaatttcttcaca--------tttttagcatttatttgacagtatca---atcaaattgatagatacgataa 23136893  T
Q  294 ataatttagggatcgatttggtggtgaatgacataatttaagaaccaactttatttttaatgaataattcagagatcgatttga 377  Q
    |||||  ||||||| ||||| | |||| |||||||||| | |||||||||| ||||||||||||||||||||||||||||||||    
T  23136892 ataatacagggatcaatttgatagtgagtgacataattcatgaaccaacttgatttttaatgaataattcagagatcgatttga 23136809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 292 - 407
Target Start/End: Complemental strand, 19828030 - 19827915
Alignment:
Q  292 aaataatttagggatcgatttggtggtgaatgacataatttaagaaccaactttatttttaatgaataattcagagatcgatttgatagtgtaacaattt 391  Q
    |||||||||| | ||||||||| |  ||| |||||||||| | | |||| ||| ||||||||||||||||| || ||||||||||| |||||||||||||    
T  19828030 aaataatttaagaatcgatttgatattgagtgacataattcatggaccatcttgatttttaatgaataatttagggatcgatttgacagtgtaacaattt 19827931  T
Q  392 gtattgactttcattt 407  Q
    ||| ||||||||||||    
T  19827930 gtaatgactttcattt 19827915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 317 - 403
Target Start/End: Complemental strand, 14575363 - 14575277
Alignment:
Q  317 gtgaatgacataatttaagaaccaactttatttttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttc 403  Q
    |||| |||||||||| | |||||||||| ||||||||||||||||| || ||| ||||||| | |||||||||||||| ||||||||    
T  14575363 gtgagtgacataattcatgaaccaacttgatttttaatgaataatttagggattgatttgacaatgtaacaatttgtaatgactttc 14575277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 251 - 403
Target Start/End: Complemental strand, 14062469 - 14062316
Alignment:
Q  251 catttatttgatagtatcaatgatcaaatcgatatataaga-aaataatttagggatcgatttggtggtgaatgacataatttaagaaccaactttattt 349  Q
    |||||||||||  ||||| | |||||| | ||||||||||| |||||||| |  ||  |||||| |  |||||||||||||||| | |||||||| ||||    
T  14062469 catttatttgacggtatctaggatcaatttgatatataagataaataattcatagaatgatttgatattgaatgacataatttatggaccaacttgattt 14062370  T
Q  350 ttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttc 403  Q
    | ||||| ||||| || ||||||||||| |||||||| ||||||| | ||||||    
T  14062369 tcaatgagtaatttagggatcgatttgacagtgtaacgatttgtaattactttc 14062316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 251 - 407
Target Start/End: Original strand, 38226151 - 38226304
Alignment:
Q  251 catttatttgatagtatcaatgatcaaatcgatatataaga-aaataatttagggatcgatttggtggtgaatgacataatttaagaaccaactttattt 349  Q
    |||||||||||||||||||| ||||| || |||| |||||| ||||||||| | ||||| |||| |  ||| |||||||||| | | ||||| || ||||    
T  38226151 catttatttgatagtatcaaggatcagattgatagataagataaataatttggtgatcgttttgataatgagtgacataattcatggaccaatttgattt 38226250  T
Q  350 ttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttcattt 407  Q
    |    ||||||||||| | | |||||||||||||||||||||| |  |||||||||||    
T  38226251 t----gaataattcaggggttgatttgatagtgtaacaatttgcaacgactttcattt 38226304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 317 - 407
Target Start/End: Complemental strand, 6037216 - 6037126
Alignment:
Q  317 gtgaatgacataatttaagaaccaactttatttttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttcattt 407  Q
    |||| |||||||||| | |||  ||||| ||||||||||||||||||| | |||||||||| ||| |||||||||||| | ||||||||||    
T  6037216 gtgagtgacataattcaggaattaacttgatttttaatgaataattcataaatcgatttgacagtataacaatttgtaataactttcattt 6037126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 19831872 - 19831975
Alignment:
Q  304 gatcgatttggtggtgaatgacataatttaagaaccaactttatttttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttc 403  Q
    |||||||||| | |||| |||||||||| |   |||| ||| ||||||||| |||||||||  |||| |||||| | |||||||||||||| ||||||||    
T  19831872 gatcgatttgatagtgattgacataattcacagaccatcttgatttttaattaataattcaaggatcaatttgacaatgtaacaatttgtaatgactttc 19831971  T
Q  404 attt 407  Q
    ||||    
T  19831972 attt 19831975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 252 - 372
Target Start/End: Original strand, 35891892 - 35892013
Alignment:
Q  252 atttatttgatagtatcaatgatcaaatcgatatataaga-aaataatttagggatcgatttggtggtgaatgacataatttaagaaccaactttatttt 350  Q
    ||||||||||||| ||||  ||||| || |||  |||||| |||||||| |  ||| |||||| | |||  |||||||||| |||||||||||| |||||    
T  35891892 atttatttgatagcatcagagatcagattgattgataagataaataattcatagatagatttgatagtgggtgacataattcaagaaccaacttgatttt 35891991  T
Q  351 taatgaataattcagagatcga 372  Q
    |||||||||||| || ||||||    
T  35891992 taatgaataatttagggatcga 35892013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 394
Target Start/End: Complemental strand, 35891562 - 35891515
Alignment:
Q  347 tttttaatgaataattcagagatcgatttgatagtgtaacaatttgta 394  Q
    |||||||||||||||| |  |||| |||||||||||||||||||||||    
T  35891562 tttttaatgaataatttatggatcaatttgatagtgtaacaatttgta 35891515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 375
Target Start/End: Complemental strand, 38225249 - 38225198
Alignment:
Q  324 acataatttaagaaccaactttatttttaatgaataattcagagatcgattt 375  Q
    |||||||||| ||||||| || ||||||||||||||||||||| || |||||    
T  38225249 acataatttaggaaccaatttaatttttaatgaataattcagaaattgattt 38225198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 448 - 530
Target Start/End: Original strand, 38226347 - 38226429
Alignment:
Q  448 tgtacacgtgggcgctgacttggaactccacgtcagcattgttaacgcgaggacttgatgaagggactaaattgattgacatt 530  Q
    |||||||||||| |||||||| ||||||||  ||||||  |||||||    |||||||  || ||||||||||||||||||||    
T  38226347 tgtacacgtgggagctgactttgaactccatatcagcaccgttaacgatgagacttgacaaatggactaaattgattgacatt 38226429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 252 - 407
Target Start/End: Complemental strand, 8588982 - 8588826
Alignment:
Q  252 atttatttgatagtatcaatgatcaaatcgatatataagaa-aataatttagggatcgatttggtggtgaa-tgacataatttaagaaccaactttattt 349  Q
    |||||||||||| |||||| |||||| | ||||  |||||  ||||||| ||||||||||||| |  |||| |||||||||| ||| |||| ||| ||||    
T  8588982 atttatttgatactatcaaggatcaatttgatagttaagatgaataattaagggatcgatttgata-tgaagtgacataattcaaggaccatcttaattt 8588884  T
Q  350 ttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttcattt 407  Q
    ||| | ||||||| |  ||||||||||| |   ||||||||| || |||| |||||||    
T  8588883 ttagtaaataatttaaggatcgatttgaaaacataacaatttttaatgaccttcattt 8588826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 2e-33; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 251 - 407
Target Start/End: Complemental strand, 46867612 - 46867456
Alignment:
Q  251 catttatttgatagtatcaatgatcaaatcgatatataaga-aaataatttagggatcgatttggtggtgaatgacataatttaagaaccaactttattt 349  Q
    |||||||||||||||||||| |||||||| |||| |||| | |||||||| |  |||||||||| | |||| |||||||||||| || ||||||| ||||    
T  46867612 catttatttgatagtatcaaggatcaaattgataaataaaataaataattcatagatcgatttgatagtgagtgacataatttagga-ccaacttgattt 46867514  T
Q  350 ttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttcattt 407  Q
    |||||||||||||||  ||||||||||||||||||||||||| || | ||||||||||    
T  46867513 ttaatgaataattcaaggatcgatttgatagtgtaacaatttataattactttcattt 46867456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 5 - 184
Target Start/End: Original strand, 20446929 - 20447107
Alignment:
Q  5 acacaaagtagaataccttttcatagtaactactcaacaaatata-catgaacaatcatgaaattcaaaactagtgaaatcacgaaataattatnnnnnn 103  Q
    |||||||||||||  | ||||||||| |||||||||||||| | | ||||||||||||| ||||||||||| |||||||||| ||||||||||           
T  20446929 acacaaagtagaaagcattttcatagcaactactcaacaaaaaaaacatgaacaatcataaaattcaaaaccagtgaaatcatgaaataattaaaaaaaa 20447028  T
Q  104 nncctgaaatgtggcgaaaatgaagaacatgtacctgatttgattacattaagattacaatggcataaccaaattaaaaga 184  Q
        |||||||| | ||||||||||||||  ||||||||||||||||| ||||| || ||| || || |||||||| ||||    
T  20447029 tg--tgaaatgtagtgaaaatgaagaacacatacctgatttgattacagtaagagtaaaatcgcgtagccaaattagaaga 20447107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 324 - 407
Target Start/End: Original strand, 41982710 - 41982793
Alignment:
Q  324 acataatttaagaaccaactttatttttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttcattt 407  Q
    |||||||| | | |||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| ||||    
T  41982710 acataattcatggaccaacttgatttttaatgaataatttaaagatcgatttgatagtgtaacaatttgtaatgacttttattt 41982793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 292 - 402
Target Start/End: Complemental strand, 51537386 - 51537276
Alignment:
Q  292 aaataatttagggatcgatttggtggtgaatgacataatttaagaaccaactttatttttaatgaataattcagagatcgatttgatagtgtaacaattt 391  Q
    |||||||| || |||||||||| | |||| |||||||||  | | || ||||| |||||||||||||| ||||| ||| ||||||| |||||||||||||    
T  51537386 aaataattaagtgatcgatttgatagtgagtgacataatccagggactaacttaatttttaatgaatagttcagggattgatttgacagtgtaacaattt 51537287  T
Q  392 gtattgacttt 402  Q
    ||| |||||||    
T  51537286 gtaatgacttt 51537276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 480 - 537
Target Start/End: Complemental strand, 46867353 - 46867296
Alignment:
Q  480 tcagcattgttaacgcgaggacttgatgaagggactaaattgattgacatttataaaa 537  Q
    |||||||||||||||  | |||||||||||||||||||||||||||||||||||||||    
T  46867353 tcagcattgttaacggcaagacttgatgaagggactaaattgattgacatttataaaa 46867296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 272 - 407
Target Start/End: Original strand, 20447175 - 20447308
Alignment:
Q  272 gatcaaatcgatatataaga-aaataatttagggatcgatttggtggtgaatgacataatttaagaaccaactttatttttaatgaataattcagagatc 370  Q
    |||||||| |||| |||||| |||||||| ||||||| ||||| | |||| |||| ||||| | | |||||||| ||||||||||||||| |||  ||||    
T  20447175 gatcaaattgatagataagataaataattcagggatcaatttgatagtgagtgac-taattcatggaccaacttgatttttaatgaataaatcaaggatc 20447273  T
Q  371 gatttgatagtgtaacaatttgtattgactttcattt 407  Q
     |||||| |||   |||||||||||||||||||||||    
T  20447274 aatttgacagtt--acaatttgtattgactttcattt 20447308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 46868864 - 46868967
Alignment:
Q  304 gatcgatttggtggtgaatgacataatttaagaaccaactttatttttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttc 403  Q
    ||||||||||   |||| ||||||| || ||  |||||||| |||||||||||||||||||  ||||||||||| |||| || |||||||| |||||||     
T  46868864 gatcgatttgacagtgagtgacatatttcaatgaccaacttgatttttaatgaataattcaatgatcgatttgacagtgaaataatttgtagtgactttt 46868963  T
Q  404 attt 407  Q
    ||||    
T  46868964 attt 46868967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 322 - 407
Target Start/End: Original strand, 32839079 - 32839164
Alignment:
Q  322 tgacataatttaagaaccaactttatttttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttcattt 407  Q
    ||||| |||| ||| |||| ||| ||| ||| |||||||||||| |||||| |||| | |||||||||||||| ||||||||||||    
T  32839079 tgacaaaattcaaggaccatcttgattcttagtgaataattcagggatcgacttgacaatgtaacaatttgtaatgactttcattt 32839164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 292 - 406
Target Start/End: Complemental strand, 20445969 - 20445856
Alignment:
Q  292 aaataatttagggatcgatttggtggtgaatgacataatttaagaaccaactttatttttaatgaataattcagagatcgatttgatagtgtaacaattt 391  Q
    ||||||||||| ||| |||||| | || | |||||||||| | | |||  ||| ||||||||| |||||||||| ||| || ||||  ||||||||||||    
T  20445969 aaataatttagagattgatttgatagtcattgacataattcagggacctgcttgatttttaatcaataattcag-gattgacttgacggtgtaacaattt 20445871  T
Q  392 gtattgactttcatt 406  Q
    || ||||||||||||    
T  20445870 gtgttgactttcatt 20445856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 292 - 403
Target Start/End: Complemental strand, 53807958 - 53807847
Alignment:
Q  292 aaataatttagggatcgatttggtggtgaatgacataatttaagaaccaactttatttttaatgaataattcagagatcgatttgatagtgtaacaattt 391  Q
    ||||||||  |||||| ||||| | |||  |||||||||||| | ||||||||  |||||||||||||||| |  |||| |||||   ||||||||||||    
T  53807958 aaataattatgggatctatttgatagtgggtgacataatttagggaccaacttgttttttaatgaataatttaaggatcaatttgtcggtgtaacaattt 53807859  T
Q  392 gtattgactttc 403  Q
    |||  |||||||    
T  53807858 gtaacgactttc 53807847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 533
Target Start/End: Original strand, 32838536 - 32838570
Alignment:
Q  499 gacttgatgaagggactaaattgattgacatttat 533  Q
    ||||||| |||||||||||||||||||||||||||    
T  32838536 gacttgacgaagggactaaattgattgacatttat 32838570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 442 - 484
Target Start/End: Complemental strand, 46867411 - 46867369
Alignment:
Q  442 cgtctctgtacacgtgggcgctgacttggaactccacgtcagc 484  Q
    |||| ||||||||||||  ||||||||||||||||||||||||    
T  46867411 cgtccctgtacacgtggaagctgacttggaactccacgtcagc 46867369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 450 - 526
Target Start/End: Complemental strand, 20445817 - 20445741
Alignment:
Q  450 tacacgtgggcgctgacttggaactccacgtcagcattgttaacg-cgaggacttgatgaagggactaaattgattga 526  Q
    |||||||||  ||||||||| |||||||||||||||  ||||||| ||| ||||||   |||||||||||||||||||    
T  20445817 tacacgtggaagctgacttgaaactccacgtcagcaccgttaacgacga-gacttggcaaagggactaaattgattga 20445741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 1e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 251 - 403
Target Start/End: Original strand, 10457946 - 10458099
Alignment:
Q  251 catttatttgatagtatcaatgatcaaatcgatatataaga-aaataatttagggatcgatttggtggtgaatgacataatttaagaaccaactttattt 349  Q
    ||||||||||| ||| |||  ||||| ||  ||| |||||| |||||||||||||||||||||| |  ||| |||||||||| | | |||||||| ||||    
T  10457946 catttatttgacagtctcagagatcatattaatagataagataaataatttagggatcgatttgataatgagtgacataattcagggaccaacttcattt 10458045  T
Q  350 ttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttc 403  Q
    |||||||||||||||  ||||||||||| |||||||||||||||| ||||||||    
T  10458046 ttaatgaataattcaacgatcgatttgacagtgtaacaatttgtaatgactttc 10458099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 292 - 403
Target Start/End: Complemental strand, 6421669 - 6421558
Alignment:
Q  292 aaataatttagggatcgatttggtggtgaatgacataatttaagaaccaactttatttttaatgaataattcagagatcgatttgatagtgtaacaattt 391  Q
    |||||||||||||||||||||| | |||| |||||||||| |   || ||||| ||||| |||||||||| ||  |||| |||||| | ||| ||| |||    
T  6421669 aaataatttagggatcgatttgatagtgagtgacataattcagacactaacttgattttgaatgaataatccaaggatcaatttgacaatgtgacagttt 6421570  T
Q  392 gtattgactttc 403  Q
    ||| ||||||||    
T  6421569 gtagtgactttc 6421558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 292 - 402
Target Start/End: Original strand, 32056589 - 32056699
Alignment:
Q  292 aaataatttagggatcgatttggtggtgaatgacataatttaagaaccaactttatttttaatgaataattcagagatcgatttgatagtgtaacaattt 391  Q
    |||||||| || |||  ||||| | |||| |||||||||||| | | || ||| ||||||||||||||||| |  |||| |||||| | |||||||||||    
T  32056589 aaataattcagagattaatttgatagtgagtgacataatttagggatcatcttgatttttaatgaataatttaaggatcaatttgacaatgtaacaattt 32056688  T
Q  392 gtattgacttt 402  Q
    ||| |||||||    
T  32056689 gtaatgacttt 32056699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 346 - 407
Target Start/End: Complemental strand, 31374548 - 31374487
Alignment:
Q  346 atttttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttcattt 407  Q
    ||||||||| ||||||||||  |||||||||||| ||||||||||  || ||||||| ||||    
T  31374548 atttttaattaataattcaggaatcgatttgataatgtaacaattaataatgactttaattt 31374487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 2e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 47303905 - 47304111
Alignment:
Q  8 caaagtagaataccttttcatagtaactactcaacaaatatacatgaacaatcatgaaattcaaaactagtgaaatcacgaaataa-ttatnnnnnnnnc 106  Q
    |||| |||||| ||||||||||| ||| | ||||||||  || ||||||||||||||||||||||||  |||||||| |||||||| |||         |    
T  47303905 caaaatagaatgccttttcatagcaaccattcaacaaaattatatgaacaatcatgaaattcaaaaccggtgaaatcgcgaaataatttaaaagaaaaac 47304004  T
Q  107 ctgaaatgtggcgaaaatgaagaacatgtacctgatttgattacattaagattacaatggcataaccaaattaaaaga-tttgagcaaggtttaacctaa 205  Q
     | |||| ||| ||||| ||||||||||| | ||||||||||||  ||||| || |||||| ||||||| | | |||| |||||||||||||||||||||    
T  47304005 gtaaaatatggtgaaaacgaagaacatgtgcgtgatttgattacgataagaataaaatggcgtaaccaattaagaagagtttgagcaaggtttaacctaa 47304104  T
Q  206 gtgagat 212  Q
    |||||||    
T  47304105 gtgagat 47304111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 255 - 407
Target Start/End: Original strand, 47304140 - 47304292
Alignment:
Q  255 tatttgatagtatcaatgatcaaatcgatatataaga-aaataatttagggatcgatttggtggtgaatgacataatttaagaaccaactttatttttaa 353  Q
    |||||||  ||||||| ||| |||| ||||||||||| |||| ||| | |||||||||||   |||| || ||||||| ||| |||||||| ||||||||    
T  47304140 tatttgacggtatcaaggattaaattgatatataagataaatgattcaaggatcgatttgaaagtgagtggcataattcaaggaccaacttgatttttaa 47304239  T
Q  354 tgaataattcagagatcgatttgatagtgtaacaatttgtattgactttcattt 407  Q
    |||||||||  | ||||||||||| | |||| |||||| |||||||||||||||    
T  47304240 tgaataattatgggatcgatttgacaatgtaccaattt-tattgactttcattt 47304292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 30332420 - 30332331
Alignment:
Q  318 tgaatgacataatttaagaaccaactttatttttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttcattt 407  Q
    |||||||||||||| | |||||| ||| ||||||||||||||| | ||  || ||||||| | |||||||||||| | ||||||||||||    
T  30332420 tgaatgacataattcaggaaccatcttgatttttaatgaataaattaggaattgatttgacaatgtaacaatttgcaatgactttcattt 30332331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 337 - 407
Target Start/End: Original strand, 30335103 - 30335173
Alignment:
Q  337 accaactttatttttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttcattt 407  Q
    |||| ||| |||||||||||||||||||| ||||||||||| | || ||||| ||||| ||||||| ||||    
T  30335103 accatcttgatttttaatgaataattcagggatcgatttgacaatgcaacaaattgtaatgactttaattt 30335173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 407
Target Start/End: Complemental strand, 31544887 - 31544836
Alignment:
Q  356 aataattcagagatcgatttgatagtgtaacaatttgtattgactttcattt 407  Q
    |||||| |||||||| |||||| |||||||||||||||| || |||||||||    
T  31544887 aataatgcagagatcaatttgacagtgtaacaatttgtaatgtctttcattt 31544836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 6e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 292 - 407
Target Start/End: Complemental strand, 26511054 - 26510939
Alignment:
Q  292 aaataatttagggatcgatttggtggtgaatgacataatttaagaaccaactttatttttaatgaataattcagagatcgatttgatagtgtaacaattt 391  Q
    |||||||||||||||||||||| | |||||| |||||||| | | |||| ||| |||||||||||||||||||| ||||||| ||||  | ||  |||||    
T  26511054 aaataatttagggatcgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgatatgatgatctagaaattt 26510955  T
Q  392 gtattgactttcattt 407  Q
    ||| ||| ||||||||    
T  26510954 gtaatgattttcattt 26510939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 292 - 403
Target Start/End: Original strand, 26511695 - 26511806
Alignment:
Q  292 aaataatttagggatcgatttggtggtgaatgacataatttaagaaccaactttatttttaatgaataattcagagatcgatttgatagtgtaacaattt 391  Q
    |||||||| || ||| |||||| |||||  |||||||||| |   |||| ||| |||||||||||||||||| |||||| |||||| | |||| | ||||    
T  26511695 aaataattcagagattgatttgatggtgggtgacataattcagagaccatcttaatttttaatgaataattcggagatcaatttgacaatgtagcgattt 26511794  T
Q  392 gtattgactttc 403  Q
    ||| ||||||||    
T  26511795 gtaatgactttc 26511806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 251 - 407
Target Start/End: Original strand, 7001011 - 7001167
Alignment:
Q  251 catttatttgatagtatcaatgatcaaatcgatatataaga-aaataatttagggatcgatttggtggtgaatgacataatttaagaaccaactttattt 349  Q
    ||||||||||| | |||||| |||||||| |||| |||  | |||||||||||| ||| |||||    ||| |||||||||| | | ||| |||| ||||    
T  7001011 catttatttgacaatatcaaggatcaaattgatagatataataaataatttagg-atccatttgaaattgagtgacataattcatggacccacttgattt 7001109  T
Q  350 ttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttcattt 407  Q
    |||| ||||||||  | ||||||||||| || ||||||||||||| ||||||||||||    
T  7001110 ttaaggaataatttcgtgatcgatttgacagcgtaacaatttgtaatgactttcattt 7001167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 292 - 407
Target Start/End: Complemental strand, 8085523 - 8085408
Alignment:
Q  292 aaataatttagggatcgatttggtggtgaatgacataatttaagaaccaactttatttttaatgaataattcagagatcgatttgatagtgtaacaattt 391  Q
    ||||||||||  |||||||||| | |||| |||||||||| | | |||| ||| ||||||||||| |||| ||| ||||||||||| | | ||| ||||     
T  8085523 aaataatttaatgatcgatttgatagtgagtgacataattcatggaccatcttgatttttaatgagtaatccagtgatcgatttgaaaatataataattc 8085424  T
Q  392 gtattgactttcattt 407  Q
    ||| || |||||||||    
T  8085423 gtaatgtctttcattt 8085408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 322 - 407
Target Start/End: Complemental strand, 33136859 - 33136774
Alignment:
Q  322 tgacataatttaagaaccaactttatttttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttcattt 407  Q
    |||||||||| ||| || | ||| ||||| ||||||||||| || ||||||||||| | || ||||||||||| ||||||| ||||    
T  33136859 tgacataattcaaggacgatcttgattttcaatgaataatttagggatcgatttgacattgcaacaatttgtaatgacttttattt 33136774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 537
Target Start/End: Original strand, 7001279 - 7001318
Alignment:
Q  498 ggacttgatgaagggactaaattgattgacatttataaaa 537  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  7001279 ggacttgatgaagagactaaattgattaacatttataaaa 7001318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 346 - 407
Target Start/End: Complemental strand, 1745890 - 1745830
Alignment:
Q  346 atttttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttcattt 407  Q
    |||||||||||||| ||||  ||||||||||| ||| ||||||||| || ||||||||||||    
T  1745890 atttttaatgaatagttcat-gatcgatttgacagtctaacaatttataatgactttcattt 1745830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 337 - 403
Target Start/End: Original strand, 1724198 - 1724264
Alignment:
Q  337 accaactttatttttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttc 403  Q
    |||||||| ||||||||| |||||| |||  ||||||||||||||||||||||||||| | ||||||    
T  1724198 accaacttgatttttaataaataatccaggtatcgatttgatagtgtaacaatttgtaataactttc 1724264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 148
Target Start/End: Complemental strand, 2127804 - 2127766
Alignment:
Q  110 aaatgtggcgaaaatgaagaacatgtacctgatttgatt 148  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  2127804 aaatgtggtgaaaatgaagaacatgtacctgatttgatt 2127766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 304 - 406
Target Start/End: Original strand, 31313456 - 31313558
Alignment:
Q  304 gatcgatttggtggtgaatgacataatttaagaaccaactttatttttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttc 403  Q
    |||||||||| |||||| ||| |||||||| | | || |||||||||||||||||||||||  |||| || ||| | || |||||||| || ||| ||||    
T  31313456 gatcgatttgatggtgagtgaaataatttaggtatcatctttatttttaatgaataattcaaggatccatgtgacaatgcaacaatttttaatgaatttc 31313555  T
Q  404 att 406  Q
    |||    
T  31313556 att 31313558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 407
Target Start/End: Complemental strand, 6454449 - 6454389
Alignment:
Q  347 tttttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttcattt 407  Q
    |||||||||||||||| || |||| ||||||  || |||||||||||| ||||||||||||    
T  6454449 tttttaatgaataatttagtgatcaatttgaccgtctaacaatttgtaatgactttcattt 6454389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 407
Target Start/End: Original strand, 6761897 - 6761957
Alignment:
Q  347 tttttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttcattt 407  Q
    |||||||||||||||| || |||| ||||||  || |||||||||||| ||||||||||||    
T  6761897 tttttaatgaataatttagggatcaatttgaccgtctaacaatttgtaatgactttcattt 6761957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 357 - 407
Target Start/End: Original strand, 1542186 - 1542236
Alignment:
Q  357 ataattcagagatcgatttgatagtgtaacaatttgtattgactttcattt 407  Q
    ||||||||| ||| ||||||||| |||||||||||||| ||| ||||||||    
T  1542186 ataattcagggattgatttgatattgtaacaatttgtaatgattttcattt 1542236  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 407
Target Start/End: Original strand, 53114366 - 53114456
Alignment:
Q  317 gtgaatgacataatttaagaaccaactttatttttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttcattt 407  Q
    |||| |||||||||| | | |||| ||| ||||||||||||||||| || |||| | |  | ||| |||||||||||| ||||||||||||    
T  53114366 gtgagtgacataattcatggaccagcttgatttttaatgaataatttagggatcaaatccacagtataacaatttgtaatgactttcattt 53114456  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 346 - 399
Target Start/End: Original strand, 9829969 - 9830022
Alignment:
Q  346 atttttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgac 399  Q
    |||||||||||||||||||   |||||||||||||| ||| |||||||| ||||    
T  9829969 atttttaatgaataattcaagtatcgatttgatagtataataatttgtagtgac 9830022  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 477 - 537
Target Start/End: Complemental strand, 6394940 - 6394880
Alignment:
Q  477 acgtcagcattgttaacg-cgaggacttgatgaagggactaaattgattgacatttataaaa 537  Q
    |||||| ||||||||||| |||| |||||||| | |||||||||||||||||||||||||||    
T  6394940 acgtcaacattgttaacgacgag-acttgatggaaggactaaattgattgacatttataaaa 6394880  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 6396665 - 6396703
Alignment:
Q  499 gacttgatgaagggactaaattgattgacatttataaaa 537  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  6396665 gacttgatggagagactaaattgattgacatttataaaa 6396703  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 253 - 394
Target Start/End: Complemental strand, 12664194 - 12664052
Alignment:
Q  253 tttatttgatagtatcaatgatcaaatcgatatataaga-aaataatttagggatcgatttggtggtgaatgacataatttaagaaccaactttattttt 351  Q
    ||||||||| ||||||||  ||||| | ||||  ||||| |||||||| | ||||| ||||  | |||  |||||||||| ||| ||||  || ||||||    
T  12664194 tttatttgacagtatcaagaatcaatttgatagttaagataaataattcatggatcaatttaatagtgtgtgacataattcaaggaccattttaattttt 12664095  T
Q  352 aatgaataattcagagatcgatttgatagtgtaacaatttgta 394  Q
    |||||||||||||  ||| ||||||||| | ||||||| ||||    
T  12664094 aatgaataattcaaggattgatttgataatataacaatatgta 12664052  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 346 - 407
Target Start/End: Original strand, 12664414 - 12664475
Alignment:
Q  346 atttttaatgaataattcagagatcgatttgatagtgtaacaatttgtattgactttcattt 407  Q
    |||||||||||||||||||  ||||||| ||| | ||||| |||||||| ||| ||||||||    
T  12664414 atttttaatgaataattcaaggatcgatgtgacaatgtaataatttgtaatgaatttcattt 12664475  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 337 - 394
Target Start/End: Complemental strand, 18342082 - 18342026
Alignment:
Q  337 accaactttatttttaatgaataattcagagatcgatttgatagtgtaacaatttgta 394  Q
    |||||||| ||||||||| |||||||||| |||| ||||||| ||| |||||||||||    
T  18342082 accaacttgatttttaat-aataattcagggatcaatttgatggtgaaacaatttgta 18342026  T

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